CB291113

Overview
NameCB291113
Unique NameCB291113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.429e-77
Identity = 151/180 (83.89%), Postives = 151/180 (83.89%), Query Frame = -1
Query:  181 MSKLLARPNVKFFNAVAAEDLIVKGGRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISGQXXXXXXXXXXXHPNALDGTYVGGVPPELILAAADFVETADA 720
            MSKLLARPNVK FNAVAAEDLIVKGGRVGGVVTNWALVSMN D QSCMDPNVMEAKVVVS CGHDGPFGA GVKRLKSIGMIEEVPGMKAL MN AED  VRL REVVPGMIV  MEVAEIDGAPRMGP FG MMISGQ            PNALDGTYVGGV PELILAAAD  ETADA
Sbjct:  177 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETADA 356          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.294e-74
Identity = 143/180 (79.44%), Postives = 148/180 (82.22%), Query Frame = -1
Query:  181 MSKLLARPNVKFFNAVAAEDLIVKGGRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISGQXXXXXXXXXXXHPNALDGTYVGGVPPELILAAADFVETADA 720
            MSKLLARPNVK FNAVAAEDLIVKGGRVGGVVTNWALVSMN D QSCMDPNVMEAKVVVS CGHDGPFGA GVK L+SIGMI+ VPGMKAL MN AED  VRL RE+VPGMIV  MEVAEIDGAPRMGP FG MMISGQ            PNALDG+YVGG+ PELILAAAD  E ADA
Sbjct:  173 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIADA 352          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.999e-71
Identity = 138/180 (76.67%), Postives = 144/180 (80.00%), Query Frame = -1
Query:  181 MSKLLARPNVKFFNAVAAEDLIVKGGRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISGQXXXXXXXXXXXHPNALDGTYVGGVPPELILAAADFVETADA 720
            MSKLLARPNVK FNAVAAEDLIVKG RVGGVVTNWALV+ N   QSCMDPNVMEAK+VVS CGHDGPFGA GVKRLKSIGMI+ VPGMKAL MN AED  VRL REVVPGMIV  MEVAEIDGAPRMGP FG MMISGQ            PNA+DGT VG + PEL+LAAAD  ET DA
Sbjct:  170 MSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVDA 349          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.272e-64
Identity = 128/173 (73.99%), Postives = 134/173 (77.46%), Query Frame = -1
Query:  202 MSKLLARPNVKFFNAVAAEDLIVKGGRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISGQXXXXXXXXXXXHPNALDGTYVGGVPPELILAAAD 720
            MS LLARPNVK FNAVA EDLIV+GGRVGGVVTNWALVSMN D QSCMDPNVMEAKVVVS CGHDGPFGA GVKRL+ IGMI  VPGMKAL MN AED  VRL REVVPGMIV  MEVAEIDGAPRMGP FG MMISGQ            PNA+DGT    +  EL++A  D
Sbjct:  176 MSLLLARPNVKLFNAVAVEDLIVRGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.298e-62
Identity = 127/176 (72.16%), Postives = 134/176 (76.14%), Query Frame = -1
Query:  202 MSKLLARPNVKFFNAVAAEDLIVKGGRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISGQXXXXXXXXXXXHPNALDGTYVGGVP---PELILAAAD 720
            MS+LLARPNVK FNAVA EDLIV+ GRVGGVVTNWALVSMN D QSCMDPNVMEAKVVVS CGHDGPFGA GVKRL+ IGMI  VPGMKAL MN AED  VRL REVVPGMIV  MEVAEIDGAPRMGP FG MMISGQ            PNA+DGT     P    E ++A+ D
Sbjct:  173 MSRLLARPNVKLFNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKD 348          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 81/142 (57.04%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  307 MSKLLARPNVKFFNAVAAEDLIVK----GGRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISG 720
            MSK+L  PN+K FNA   EDLI +    G R+ GVVTNW LVSM+ D QSCMDPN + A +++S  GHDGP GA  VKRL S+  IE++ GM+ L MN AED  V+  RE+VPG+IV  ME++E+DGA RMGP FG M +SG
Sbjct:  159 MSKVLQMPNIKLFNATCVEDLITRPSEEGVRIAGVVTNWTLVSMHHDDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSG 300          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.494e-39
Identity = 82/142 (57.75%), Postives = 101/142 (71.13%), Query Frame = -1
Query:  307 MSKLLARPNVKFFNAVAAEDLIVK----GGRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISG 720
            MSK+L  PN K FNA   EDLI +    G R+ GVVTNW LVSM+ D QSCMDPN + A +V+S  GHD P GA  VKRL S+G IE++ GM+ L MN AED  V+  RE+VPG+IV  ME++E+DGA RMGP FG M++SG
Sbjct:  163 MSKVLQLPNCKLFNATCVEDLITRPSKEGVRISGVVTNWTLVSMHHDDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSG 304          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.230e-38
Identity = 85/143 (59.44%), Postives = 99/143 (69.23%), Query Frame = -1
Query:  307 MSKLLARPNVKFFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISG 720
            M++ LA PNVK FNA A EDLIVK G     R+ GVVTNW LVS+N   QSCMDPN + A +VVS  GHDGPFGA  VKRL S  ++  +  M+ L MN AED+ V+  REV PGMIV  ME++E DGA RMGP FG MM SG
Sbjct:  164 MARTLALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSG 306          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36
Identity = 78/146 (53.42%), Postives = 99/146 (67.81%), Query Frame = -1
Query:  304 MSKLLARPNVKFFNAVAAEDLIVKG-------GRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISGQ 720
            +SK+LA PNVK FNA A EDLI+K         R+ G VTNW LVS+N D QSCMDP+ + A +V SF GHDGPFGA  VKR+ S G+ E +  M+ L M  AED      RE++PG+IV  ME++E DG+ RMGP FG M++SG+
Sbjct:  168 LSKVLAMPNVKMFNATACEDLIIKPCPINPGVQRIAGCVTNWTLVSLNHDHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGK 313          
BLAST of CB291113 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 75/143 (52.45%), Postives = 99/143 (69.23%), Query Frame = -1
Query:  307 MSKLLARPNVKFFNAVAAEDLIVK-----GGRVGGVVTNWALVSMNPDPQSCMDPNVMEAKVVVSFCGHDGPFGAPGVKRLKSIGMIEEVPGMKALAMNFAEDVFVRLPREVVPGMIVPAMEVAEIDGAPRMGPPFGPMMISG 720
            MSK+L+ PNVK FNA A EDLI +       ++ GVV NW LV+++ D  SCMDPN + A V++S  GHDGPFGA   KRL S+G ++++ GM+ L MN AED  V+  REV  G+I+  ME++EIDG  RMGP FG M++SG
Sbjct:  165 MSKVLSFPNVKLFNATAVEDLITRPTENGNPQIAGVVVNWTLVTLHHDDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSG 307          
The following BLAST results are available for this feature:
BLAST of CB291113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
THI4_CITSI1.429e-7783.89Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL3.294e-7479.44Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.999e-7176.67Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE5.272e-6473.99Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.298e-6272.16Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSOX3.441e-3957.04Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSSH4.494e-3957.75Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI2_SCHPO2.230e-3859.44Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA2.726e-3653.42Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_ASPOR6.074e-3652.45Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02be10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291113 ID=CB291113; Name=CB291113; organism=Citrus sinensis; type=EST; length=720bp
TTTTTTTTTTTTTTTTTCTTTTGGACCGGAAACAAACACTTTATTCACAA
AACCTCACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCAC
CTAAATACAACTACTTTTTTGCCAAAGTTTATTTGCATGCACCCAGCTGA
TGAGTGATGATGCCTGGTATTACCAAATTAAGCATCAGCAGTCTCAACAA
AATCAGCTGCAGCTAAAATCAGCTCAGGGGGAACGCCCCCCACATATGTA
CCGTCTAATGCATTCGGGTGGGCCAGGGACTTCAACGCCAAATGGGCAGC
CTTCTGCCCCGAAATCATCATTGGTCCAAATGGTGGCCCCATTCGAGGAG
CACCATCAATCTCGGCAACTTCCATGGCGGGAACTATCATACCAGGCACA
ACCTCCCTGGGCAGCCTCACAAAAACATCTTCTGCAAAGTTCATGGCCAG
GGCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCT
TTACTCCAGGGGCCCCAAAAGGCCCATCATGGCCACAAAAGCTCACAACC
ACCTTCGCTTCCATTACATTGGGATCCATGCAAGACTGGGGATCGGGATT
CATTGACACCAACGCCCAGTTGGTCACCACACCACCAACTCTGCCGCCTT
TGACTATCAAGTCCTCGGCTGCCACTGCATTAAAAAACTTGACGTTGGGG
CGGGCCAGGAGCTTGCTCAT
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