CB291116

Overview
NameCB291116
Unique NameCB291116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB291116 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.862e-38
Identity = 100/269 (37.17%), Postives = 145/269 (53.90%), Query Frame = 2 
Query:   86 GKLPATSLSDEKLEILKKYEQGKTDNLLSKYMGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMKPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEAREMIRLKKKETKDDAERCAKAKWAICLCN 892
            GKLPA+S+S+EKL++L+KYE  K D LLSKY+ FCGKV                                 LS      GKS++A+SGS++V+ + P++CE +IICGGK+VSLK + +                   N  +   KMF   GRN +R    S G + D   S S+W+  +QEIE YFQ L S NL   +  E  + + + +  + + A  +  +M VAE+ E+++ K+NEA+ MI  K +E K +AER  +A+WAI LCN
Sbjct:   69 GKLPASSVSEEKLQVLRKYEDQKIDKLLSKYITFCGKV-------------------------------CPLSVNFVLFGKSKSAISGSFYVYQNKPEFCEFYIICGGKMVSLKNDVN---------------NNNSNIRSWIGKMFHDPGRNLDR----SSGNNDDPTASGSSWDKNLQEIENYFQQLLSLNL---AEEETENVVEEEQEDDDDVALNVLQHMDVAEKLEYVRRKVNEAKLMIDEKSREVKVNAERSNRAEWAISLCN 284
The following BLAST results are available for this feature:
BLAST of CB291116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUB50_ARATH1.862e-3837.17Putative U-box domain-containing protein 50 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02be12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291116 ID=CB291116; Name=CB291116; organism=Citrus sinensis; type=EST; length=892bp
TTTTTTCTTCCTCATCATTAGCTCACATGACTTTTCTTAATTCTGTATTT
TTCATTTGCATATGTATTCTTTTCCTTGTTCAGTTGGCAAGCTTCCTGCA
ACTTCTTTGAGCGATGAGAAGCTTGAAATCTTGAAGAAGTATGAACAAGG
AAAGACTGACAATCTGCTCTCCAAGTACATGGGTTTCTGTGGCAAGGTTA
AGGCGGAGATACTGAAAGTCGAGAAATCTGATGAACCTGTTCACAAGCTC
ATACTAGATTTGGTCTCACGATTGACAATAACCAAATTGGTCATGGGACT
TTCTTTCATGAAACCATCAGCAGGGAAATCAAGAACTGCAGTCAGCGGAT
CATATTTTGTCCATCATCATATGCCTGATTACTGTGAACTGTTTATAATC
TGCGGAGGGAAATTGGTGTCTCTGAAAGGAGAGAACGATGAGGGGATAAT
GGAGGACGATCAAGGAGTCAAATTTGCTAAAATGAGAGAAAGGGTTAATT
TTGGAAACTTGTGGACCAAAATGTTTTCTGGAAACGGAAGAAATCCCAAT
CGCTTATCGATTTGTTCGAGGGGCCCGGACGCGGACTCCCCTTATTCACG
GAGTACGTGGGAAAATTGTGTGCAGGAAATTGAAATTTATTTTCAGCATT
TGGCGTCTTTCAATCTGGACGACGCATCGAATTCTGAAGACGGGGATGAA
ATTTTGCAGACACGTGCAATAGAGCCAAACGCAGCGGAACAAATCGATTC
TAATATGAGTGTTGCAGAGAGAACTGAATTCATGAAAAGTAAAATAAATG
AAGCTCGGGAGATGATCCGGTTGAAGAAAAAAGAGACCAAAGACGATGCC
GAAAGATGCGCAAAAGCTAAGTGGGCTATTTGCTTGTGCAAT
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