CB291117

Overview
NameCB291117
Unique NameCB291117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB291117 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.641e-30
Identity = 85/240 (35.42%), Postives = 125/240 (52.08%), Query Frame = 2 
Query:   89 GKLPATSLSDEKLEILKKYEQGKTDNLLSKYMGFCGKVKAEILKVEKSDEPVHKLILDLVSRLTITKLVMGLSFMKPSAGKSRTAVSGSYFVHHHMPDYCELFIICGGKLVSLKGENDEGIMEDDQGVKFAKMRERVNFGNLWTKMFSGNGRNPNRLSICSRGPDADSPYSRSTWENCVQEIEIYFQHLASFNLDDASNSEDGDEILQTRAIEPNAAEQIDSNMSVAERTEFMKSKINEA 808
            GKLPA+S+S+EKL++L+KYE  K D LLSKY+ FCGKV                                 LS      GKS++A+SGS++V+ + P++CE +IICGGK+VSLK + +                   N  +   KMF   GRN +R    S G + D   S S+W+  +QEIE YFQ L S NL   +  E  + + + +  + + A  +  +M VAE+ E+++ K+NEA
Sbjct:   69 GKLPASSVSEEKLQVLRKYEDQKIDKLLSKYITFCGKV-------------------------------CPLSVNFVLFGKSKSAISGSFYVYQNKPEFCEFYIICGGKMVSLKNDVN---------------NNNSNIRSWIGKMFHDPGRNLDR----SSGNNDDPTASGSSWDKNLQEIENYFQQLLSLNL---AEEETENVVEEEQEDDDDVALNVLQHMDVAEKLEYVRRKVNEA 255
The following BLAST results are available for this feature:
BLAST of CB291117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUB50_ARATH4.641e-3035.42Putative U-box domain-containing protein 50 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02be12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02be12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291117 ID=CB291117; Name=CB291117; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTCTTCCTCATCATTAGCTCACATGACTTTTCTTCCTTCTGTA
TTTTTCATTTGCATATGTATTCTTTTCCTTGTTCAGTTGGCAAGCTTCCT
GCAACTTCTTTGAGCGATGAGAAGCTTGAAATCTTGAAGAAGTATGAACA
AGGAAAGACTGACAATCTGCTCTCCAAGTACATGGGTTTCTGTGGCAAGG
TTAAGGCGGAGATACTGAAAGTCGAGAAATCTGATGAACCTGTTCACAAG
CTCATACTAGATTTGGTCTCACGATTGACAATAACCAAATTGGTCATGGG
ACTTTCTTTCATGAAACCATCAGCAGGGAAATCAAGAACTGCAGTCAGCG
GATCATATTTTGTCCATCATCATATGCCTGATTACTGTGAACTGTTTATA
ATCTGCGGAGGGAAATTGGTGTCTCTGAAAGGAGAGAACGATGAGGGGAT
AATGGAGGACGATCAAGGAGTCAAATTTGCTAAAATGAGAGAAAGGGTTA
ATTTTGGAAACTTGTGGACCAAAATGTTTTCTGGAAACGGAAGAAATCCC
AATCGCTTATCGATTTGTTCGAGGGGCCCGGACGCGGACTCCCCTTATTC
ACGGAGTACGTGGGAAAATTGTGTGCAGGAAATTGAAATTTATTTTCAGC
ATTTGGCGTCTTTCAATCTGGACGACGCATCGAATTCTGAAGACGGGGAT
GAAATTTTGCAGACACGTGCAATAGAGCCAAACGCAGCGGAACAAATCGA
TTCTAATATGAGTGTTGCAGAGAGAACTGAATTCATGAAAAGTAAAATAA
ATGAAGCTC
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