CB291119
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41 Identity = 86/114 (75.44%), Postives = 91/114 (79.82%), Query Frame = -3 Query: 323 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFSXXXXXXXXXXEAQLATSKSKK 664 FTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+I HIQVNQA KQR R R HGRINPYMS+PCHIEL S E QLA +KSKK Sbjct: 60 FTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41 Identity = 86/114 (75.44%), Postives = 91/114 (79.82%), Query Frame = -3 Query: 323 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFSXXXXXXXXXXEAQLATSKSKK 664 FTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+I HIQVNQA KQR R R HGRINPYMS+PCHIEL S E QLA +KSKK Sbjct: 60 FTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.078e-40 Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = -3 Query: 386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664 F R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+ HIQVNQAQKQR R R HGRINPYMSSPCHIEL S Sbjct: 60 FRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.037e-39 Identity = 78/93 (83.87%), Postives = 81/93 (87.10%), Query Frame = -3 Query: 386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664 F R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYI HIQVNQAQKQR R R HGRINPYMS+PCHIEL S Sbjct: 60 FRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.497e-38 Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = -3 Query: 386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664 F R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYI HIQVNQAQKQR R R HGRINPYMS+PCHIEL S Sbjct: 60 FRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.343e-30 Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = -3 Query: 395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664 F RFCGGVGR AQAK + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A R R R HGRINPYMSSPCHIE+ Sbjct: 60 FRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEM 148
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28 Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = -3 Query: 395 FTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664 F RF GGVGR AQAKN + P QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A R R R HGRINPYM+SPCHIE+ Sbjct: 60 FRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEM 150
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28 Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = -3 Query: 395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664 F R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K R R R HGRINPYMSSPCHIE+ Sbjct: 60 FRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEM 148
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28 Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = -3 Query: 395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664 F R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K R R R HGRINPYMSSPCHIE+ Sbjct: 60 FRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEM 148
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28 Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = -3 Query: 395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664 F R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K R R R HGRINPYMSSPCHIE+ Sbjct: 60 FRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEM 148 The following BLAST results are available for this feature:
BLAST of CB291119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >CB291119 ID=CB291119; Name=CB291119; organism=Citrus sinensis; type=EST; length=672bpback to top |