CB291119

Overview
NameCB291119
Unique NameCB291119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 86/114 (75.44%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  323 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFSXXXXXXXXXXEAQLATSKSKK 664
            FTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+I HIQVNQA KQR R  R HGRINPYMS+PCHIEL  S          E QLA +KSKK
Sbjct:   60 FTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 86/114 (75.44%), Postives = 91/114 (79.82%), Query Frame = -3
Query:  323 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFSXXXXXXXXXXEAQLATSKSKK 664
            FTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+I HIQVNQA KQR R  R HGRINPYMS+PCHIEL  S          E QLA +KSKK
Sbjct:   60 FTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.078e-40
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = -3
Query:  386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664
            F R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+ HIQVNQAQKQR R  R HGRINPYMSSPCHIEL  S
Sbjct:   60 FRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.037e-39
Identity = 78/93 (83.87%), Postives = 81/93 (87.10%), Query Frame = -3
Query:  386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664
            F R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYI HIQVNQAQKQR R  R HGRINPYMS+PCHIEL  S
Sbjct:   60 FRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.497e-38
Identity = 76/93 (81.72%), Postives = 80/93 (86.02%), Query Frame = -3
Query:  386 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIELPFS 664
            F R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYI HIQVNQAQKQR R  R HGRINPYMS+PCHIEL  S
Sbjct:   60 FRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.343e-30
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F RFCGGVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   R R  R HGRINPYMSSPCHIE+
Sbjct:   60 FRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEM 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 62/91 (68.13%), Postives = 71/91 (78.02%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F RF GGVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   R R  R HGRINPYM+SPCHIE+
Sbjct:   60 FRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEM 150          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K R R  R HGRINPYMSSPCHIE+
Sbjct:   60 FRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEM 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K R R  R HGRINPYMSSPCHIE+
Sbjct:   60 FRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEM 148          
BLAST of CB291119 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 9.104e-28
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = -3
Query:  395 FTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYIFHIQVNQAQKQRPRPSRVHGRINPYMSSPCHIEL 664
            F R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K R R  R HGRINPYMSSPCHIE+
Sbjct:   60 FRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEM 148          
The following BLAST results are available for this feature:
BLAST of CB291119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL172_ARATH9.377e-4175.4460S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH9.377e-4175.4460S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL17_MAIZE6.078e-4083.8760S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU1.037e-3983.8760S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU1.497e-3881.7260S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA3.343e-3073.3360S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO5.337e-2868.1360S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_RAT9.104e-2870.0060S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE9.104e-2870.0060S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_HUMAN9.104e-2870.0060S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291119 ID=CB291119; Name=CB291119; organism=Citrus sinensis; type=EST; length=672bp
AACCGAACCAACCATTTACAAGATATTCAAATTCGATTAGCTGATAATGG
CATTTGGTTTGGAATGACAACTCATACACCCATATCTCTAAGCTTCAAAA
TAAGCTTGAAAAGTCTTTAATTTTCATAAAGCTCCAACAGAATGACTGAG
GATTCTAACAAAACAGTAAACTGGACTTAATATGAAATAAACAAAATATG
ATGTCTGATTTGACTAAATAACATCTCAGTCACTATTAAAGGGAAAAAAA
CTCCCTTCATCAAGAACACAAAATAAAAAATCAATGCACTCTCCAATTGC
TATGCTAAACCTCAAACAATTACTTCTTTGATTTGCTAGTTGCCAACTGG
GCCTCAGGCTCTTTCTTTACGGGCTCTTCCTTTTCAGAAAAGGGCAACTC
AATATGGCAGGGAGAGGACATGTAAGGATTAATTCTTCCATGAACACGGG
ATGGGCGGGGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAAAAATG
TAAAGTGCATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATT
CTTGAGCAAGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGACCCT
GTCCATTTGGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCG
CAAAATCGTGTGAAGCCTCGTG
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