CB291120
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 249.21 bits (635), Expect = 2.046e-65 Identity = 133/203 (65.52%), Postives = 143/203 (70.44%), Query Frame = -3 Query: 213 KRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXKFYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 821 KRGLWAIKAKNGGVFP+H KFYPADDVKKPL+NKRKPKP KLRASITPGTVLIILAGRFKGKRVVFLKQ FK+NGVPLRRVNQ+YVI T TKVDISGVNV+KFDDKYF K+ KDDQK+VD L+KAIE VP+LKAYLG RFSL+AGMKPHELVF Sbjct: 32 KRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 1.732e-64 Identity = 132/203 (65.02%), Postives = 142/203 (69.95%), Query Frame = -3 Query: 213 KRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXKFYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 821 KRGLWAIKAKNGGVFPRHD KFYPA+DVKKPLVN+RKPKP KL+ASITPGTVLIILAGRFKGKRVVFLKQ FKINGVPLRRVNQ+YVIGT TK+DISGVN +KFDDKYF K K+DQK+VDA LIK+IEAVP+LK YLG RFSL GMKPHELVF Sbjct: 31 KRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.123e-63 Identity = 133/203 (65.52%), Postives = 140/203 (68.97%), Query Frame = -3 Query: 213 KRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXKFYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 821 KRGLWAIKAKNGGVFPRHD KFYPA+DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQ FKINGVPLRRVNQ+YVIGT TKVDISGV +DKFDDKYF K KDDQK+VDA LIKAIEAVP+LK YLG RFSL+ GMKPHELVF Sbjct: 31 KRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.123e-63 Identity = 133/203 (65.52%), Postives = 140/203 (68.97%), Query Frame = -3 Query: 213 KRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXKFYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 821 KRGLWAIKAKNGGVFPRHD KFYPA+DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQ FKINGVPLRRVNQ+YVIGT TKVDISGV +DKFDDKYF K KDDQK+VDA LIKAIEAVP+LK YLG RFSL+ GMKPHELVF Sbjct: 31 KRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32 Identity = 79/170 (46.47%), Postives = 98/170 (57.65%), Query Frame = -3 Query: 213 FYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722 +YP++DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK FK+NGVPLRRVN YVI T TKV + GVNV+KF+ +YFAKE +DQK VD L+ I+ P LK YL FSL+ G KPH L F Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 136.346 bits (342), Expect = 1.933e-31 Identity = 79/170 (46.47%), Postives = 97/170 (57.06%), Query Frame = -3 Query: 213 FYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722 +YP++DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK FK+NGVPLRRVN YVI T TKV + GVNV+KF+ +YFAKE +DQK VD LI I+ P LK YL FSL+ G KPH L F Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 8.405e-27 Identity = 72/171 (42.11%), Postives = 96/171 (56.14%), Query Frame = -3 Query: 213 FYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFT-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722 +YPA P ++ +P KLRAS+ PGTV I+LAGRF+GKRVV L Q +K+NGVP+RRVN YVI T K+D+SGV+V+KF YFAK+ DQK+VDA L+ AI+A+P++K YL F+L G +PH + F Sbjct: 27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQ-LEDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26 Identity = 73/176 (41.48%), Postives = 98/176 (55.68%), Query Frame = -3 Query: 213 FYPADDVKKPLVNKRKPKP-----PKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722 +YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRV+FLKQ +N VPLRR +Q +VI T TK+DISGV + + D YF K+ DQK+VD+ +++ I+AVP L+ YL F+L G+ PH+LVF Sbjct: 111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 118.627 bits (296), Expect = 4.171e-26 Identity = 77/176 (43.75%), Postives = 98/176 (55.68%), Query Frame = -3 Query: 213 FYPADDVKKPLVNKRKPKP-----PKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722 +YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQ +N VPLRR +Q +VI T TKVDIS V + K D YF K+ K DQK+VD+ ++ I+AVP L+ YL +FSL GM PH+LVF Sbjct: 125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 118.627 bits (296), Expect = 4.171e-26 Identity = 78/176 (44.32%), Postives = 97/176 (55.11%), Query Frame = -3 Query: 213 FYPADDVKKPLVNKRKPKP-----PKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722 +YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQ IN VPLRR +Q +VI T TKVDIS V + K D YF K+ K DQK+VD ++ I+AVP L+ YL +FSL GM PH+LVF Sbjct: 123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296 The following BLAST results are available for this feature:
BLAST of CB291120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CB291120 ID=CB291120; Name=CB291120; organism=Citrus sinensis; type=EST; length=823bpback to top |