CB291120

Overview
NameCB291120
Unique NameCB291120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.046e-65
Identity = 133/203 (65.52%), Postives = 143/203 (70.44%), Query Frame = -3
Query:  213 KRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXKFYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 821
            KRGLWAIKAKNGGVFP+H              KFYPADDVKKPL+NKRKPKP KLRASITPGTVLIILAGRFKGKRVVFLKQ           FK+NGVPLRRVNQ+YVI T TKVDISGVNV+KFDDKYF K+                           KDDQK+VD  L+KAIE VP+LKAYLG RFSL+AGMKPHELVF
Sbjct:   32 KRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.732e-64
Identity = 132/203 (65.02%), Postives = 142/203 (69.95%), Query Frame = -3
Query:  213 KRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXKFYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 821
            KRGLWAIKAKNGGVFPRHD             KFYPA+DVKKPLVN+RKPKP KL+ASITPGTVLIILAGRFKGKRVVFLKQ           FKINGVPLRRVNQ+YVIGT TK+DISGVN +KFDDKYF K                            K+DQK+VDA LIK+IEAVP+LK YLG RFSL  GMKPHELVF
Sbjct:   31 KRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.123e-63
Identity = 133/203 (65.52%), Postives = 140/203 (68.97%), Query Frame = -3
Query:  213 KRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXKFYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 821
            KRGLWAIKAKNGGVFPRHD             KFYPA+DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQ           FKINGVPLRRVNQ+YVIGT TKVDISGV +DKFDDKYF K                            KDDQK+VDA LIKAIEAVP+LK YLG RFSL+ GMKPHELVF
Sbjct:   31 KRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.123e-63
Identity = 133/203 (65.52%), Postives = 140/203 (68.97%), Query Frame = -3
Query:  213 KRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXKFYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 821
            KRGLWAIKAKNGGVFPRHD             KFYPA+DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQ           FKINGVPLRRVNQ+YVIGT TKVDISGV +DKFDDKYF K                            KDDQK+VDA LIKAIEAVP+LK YLG RFSL+ GMKPHELVF
Sbjct:   31 KRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 79/170 (46.47%), Postives = 98/170 (57.65%), Query Frame = -3
Query:  213 FYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722
            +YP++DV  P   ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK            FK+NGVPLRRVN  YVI T TKV + GVNV+KF+ +YFAKE                            +DQK VD  L+  I+  P LK YL   FSL+ G KPH L F
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.933e-31
Identity = 79/170 (46.47%), Postives = 97/170 (57.06%), Query Frame = -3
Query:  213 FYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722
            +YP++DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK            FK+NGVPLRRVN  YVI T TKV + GVNV+KF+ +YFAKE                            +DQK VD  LI  I+  P LK YL   FSL+ G KPH L F
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 8.405e-27
Identity = 72/171 (42.11%), Postives = 96/171 (56.14%), Query Frame = -3
Query:  213 FYPADDVKKPLVNKRKPKPPKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFT-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722
            +YPA     P   ++  +P KLRAS+ PGTV I+LAGRF+GKRVV L Q           +K+NGVP+RRVN  YVI T   K+D+SGV+V+KF   YFAK+                             DQK+VDA L+ AI+A+P++K YL   F+L  G +PH + F
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQ-LEDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.194e-26
Identity = 73/176 (41.48%), Postives = 98/176 (55.68%), Query Frame = -3
Query:  213 FYPADDVKKPLVNKRKPKP-----PKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722
            +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQ             +N VPLRR +Q +VI T TK+DISGV + +   D YF K+                             DQK+VD+ +++ I+AVP L+ YL   F+L  G+ PH+LVF
Sbjct:  111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKV-DQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 118.627 bits (296), Expect = 4.171e-26
Identity = 77/176 (43.75%), Postives = 98/176 (55.68%), Query Frame = -3
Query:  213 FYPADDVKKPLVNKRKPKP-----PKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722
            +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQ             +N VPLRR +Q +VI T TKVDIS V + K   D YF K+                           K DQK+VD+ ++  I+AVP L+ YL  +FSL  GM PH+LVF
Sbjct:  125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of CB291120 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 4.171e-26
Identity = 78/176 (44.32%), Postives = 97/176 (55.11%), Query Frame = -3
Query:  213 FYPADDVKKPLVNKRKPKP-----PKLRASITPGTVLIILAGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQSYVIGTFTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXKDDQKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 722
            +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQ             IN VPLRR +Q +VI T TKVDIS V + K   D YF K+                           K DQK+VD  ++  I+AVP L+ YL  +FSL  GM PH+LVF
Sbjct:  123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
The following BLAST results are available for this feature:
BLAST of CB291120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR2.046e-6565.5260S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH1.732e-6465.0260S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH1.123e-6365.5260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH1.123e-6365.5260S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6B_YEAST3.895e-3246.4760S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST1.933e-3146.4760S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_SCHPO8.405e-2742.1160S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_PIG3.194e-2641.4860S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_RAT4.171e-2643.7560S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_MOUSE4.171e-2644.3260S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bf02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bf02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291120 ID=CB291120; Name=CB291120; organism=Citrus sinensis; type=EST; length=823bp
TTTTTTTTTTTTTTTTTAAAAGGAAAGGTCACCGAGTATATATCAGTAAT
CAATTGTACTTTAAAAAAAGCATTTCATTTGCCTAACATCATACCAAAAT
TTAAATGTCTGATCCCATGAAACAAAGATTACAACTGCTAAAATAAATTT
CAAACAAAACATAACAAGTAGGAAAAAGCAAAGCAATCCTAAATTGTTTC
AACATGTTTTCAAAAAACAAGTTCATGAGGTTTCATGCCGGCCCTGAGGG
AAAACCTACCACCAAGGTAAGCCTTCAAGTCTGGAACAGCTTCAATGGCC
TTGATCAATGGTGCATCAACAGACTTCTGATCATCCTTCTTCTCCTGAGG
AAGCGACTTCTTCTCCTCTTTCTCTGACTCAAAAAACTCATTCTCTCCTT
TCTTCTTCTTCCTCTCGACTTCCTTGGCAAAATACTTATCATCAAACTTA
TCCACATTCACTCCGGAAATATCAACTTTGGTAAAAGTTCCAATCACGTA
AGACTGGTTCACACGTCGTAAAGGAACACCATTGATCTTAAATGGCCCAA
AAACTAAAAGCAACCCAAATGGAAGCTGCTTCAGGAACACAACTCTCTTA
CCCTTGAACCTTCCAGCTAGTATAATCAGCACTGTCCCTGGGGTGATGCT
TGCTCTAAGTTTGGGGGGTTTAGGCTTGCGCTTGTTGACGAGTGGTTTCT
TGACGTCATCGGCGGGGTAAAACTTGGGGGGCTTCTCGGCGGGAGCAGCG
GCTTTGGGCTTGGGGTCGTGACGAGGAAAGACGCCACCGTTTTTGGCTTT
AATTGCCCAGAGACCCCTCTTAT
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