CB291121

Overview
NameCB291121
Unique NameCB291121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.367e-52
Identity = 111/170 (65.29%), Postives = 119/170 (70.00%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            FYPADDVKKPL+NKRKPKPTKLRASITPGTVLIIL GRFKGKRVVFLKQ           FK+NGVPLRRVNQ YVI T TKVDISGVNV+KFDDKYF K+                               K+VD  L+KAIE VP+LKAYLG RFSL+AGMKPHELVF
Sbjct:   65 FYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.501e-51
Identity = 109/170 (64.12%), Postives = 117/170 (68.82%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            FYPA+DVKKPLVN+RKPKPTKL+ASITPGTVLIIL GRFKGKRVVFLKQ           FKINGVPLRRVNQ YVIGT TK+DISGVN +KFDDKYF K                                K+VDA LIK+IEAVP+LK YLG RFSL  GMKPHELVF
Sbjct:   64 FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.415e-49
Identity = 109/170 (64.12%), Postives = 115/170 (67.65%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            FYPA+DVKKPL N+R  KPTKLRASITPGTVLIIL GRFKGKRVVFLKQ           FKINGVPLRRVNQ YVIGT TKVDISGV +DKFDDKYF K                                K+VDA LIKAIEAVP+LK YLG RFSL+ GMKPHELVF
Sbjct:   64 FYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.376e-49
Identity = 108/170 (63.53%), Postives = 114/170 (67.06%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            FYPA+DVKKPL N+R  KP KLRASITPGTVLIIL GRFKGKRVVFLKQ           FKINGVPLRRVNQ YVIGT TKVDISGV +DKFDDKYF K                                K+VDA LIKAIEAVP+LK YLG RFSL+ GMKPHELVF
Sbjct:   64 FYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 2.348e-28
Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            +YP++DV  P   ++  +P KLRAS+ PGTVLI+L GRF+GKRVV+LK            FK+NGVPLRRVN  YVI T TKV + GVNV+KF+ +YF KE                               K VD  L+  I+  P LK YL   FSL+ G KPH L F
Sbjct:    9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 75/170 (44.12%), Postives = 92/170 (54.12%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            +YP++DV      ++  +P KLRAS+ PGTVLI+L GRF+GKRVV+LK            FK+NGVPLRRVN  YVI T TKV + GVNV+KF+ +YF KE                               K VD  LI  I+  P LK YL   FSL+ G KPH L F
Sbjct:    9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24
Identity = 69/171 (40.35%), Postives = 93/171 (54.39%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFT-KVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            +YPA     P   ++  +PTKLRAS+ PGTV I+L GRF+GKRVV L Q           +K+NGVP+RRVN  YVI T   K+D+SGV+V+KF   YF K+                               K+VDA L+ AI+A+P++K YL   F+L  G +PH + F
Sbjct:   27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQ-LEDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.985e-24
Identity = 71/176 (40.34%), Postives = 96/176 (54.55%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNV-DKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQ             +N VPLRR +Q +VI T TK+DISGV + +   D YF K+                               K+VD+ +++ I+AVP L+ YL   F+L  G+ PH+LVF
Sbjct:  111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKK-KLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 110.923 bits (276), Expect = 7.817e-24
Identity = 74/176 (42.05%), Postives = 95/176 (53.98%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDK-FDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQ             +N VPLRR +Q +VI T TKVDIS V + K   D YF K+                               K+VD+ ++  I+AVP L+ YL  +FSL  GM PH+LVF
Sbjct:  125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.817e-24
Identity = 75/176 (42.61%), Postives = 94/176 (53.41%), Query Frame = -2
Query:  222 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDK-FDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731
            +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQ             IN VPLRR +Q +VI T TKVDIS V + K   D YF K+                               K+VD  ++  I+AVP L+ YL  +FSL  GM PH+LVF
Sbjct:  123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
The following BLAST results are available for this feature:
BLAST of CB291121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR1.367e-5265.2960S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH7.501e-5164.1260S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH1.415e-4964.1260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH5.376e-4963.5360S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6B_YEAST2.348e-2844.1260S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST1.165e-2744.1260S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_SCHPO3.509e-2440.3560S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_PIG5.985e-2440.3460S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_RAT7.817e-2442.0560S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]
RL6_MOUSE7.817e-2442.6160S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bf02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bf02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291121 ID=CB291121; Name=CB291121; organism=Citrus sinensis; type=EST; length=774bp
TTTTAATTTTTTTATTCTTTTTTCTAAAAAGGAAAGGCCCCATAGAATAT
ATCAGTAATCAATTGTACTTTAAGAAAAGCATTTCATTTGCCTAACATCA
TACCAAAATTTAAATGTCTGATCCCCTGAAACAAAAATTACAACTGCTAA
AATAAATTTCAAACAAAACATAACAAGTAGGAAAAAGCAAAGCAATCCTA
AATTGTTTCAACATGTTTTCAAAAAACAAGTTCATGAGGTTTCATGCCGG
CCCTGAGGGAAAACCTACCACCAAGGTAAGCCTTCAAGTCTGGAACAGCT
TCAATGGCCTTGATCAATGGTGCATCAACAGACTTCTGATCATCCTTCTT
CTCCTGAGGAAGCAACTTCTTCTCCTCTTTCTCTGACTCAAAAAACTCAT
TCTCTCCTTTCTTCTTCTTCCTCTCGACTTCCTTGGGAAAATACTTATCA
TCAAACTTATCCACATTCACTCCGGAAATATCAACTTTGGTAAAAGTTCC
AATCACGTAAAACTGGTTCACACGTCGTAAAGGAACACCATTGATCTTAA
ATGGCCCAAAAACTAAAAGCAACCCAAATGGAAGCTGCTTCAGGAACACA
ACTCTCTTACCCTTGAACCTTCCAACTAGTATAATCAGCACTGTCCCTGG
GGTGATGCTTGCTCTAAGTTTGGTGGGTTTAGGCTTGCGCTTGTTGACGA
GTGGTTTCTTGACGTCATCGGCGGGGTAAAACTTGGGGGGCTTCTCGGCG
GGAGCAGCGGCTTTGGGCTTGGGG
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