CB291121
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.367e-52 Identity = 111/170 (65.29%), Postives = 119/170 (70.00%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 FYPADDVKKPL+NKRKPKPTKLRASITPGTVLIIL GRFKGKRVVFLKQ FK+NGVPLRRVNQ YVI T TKVDISGVNV+KFDDKYF K+ K+VD L+KAIE VP+LKAYLG RFSL+AGMKPHELVF Sbjct: 65 FYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 7.501e-51 Identity = 109/170 (64.12%), Postives = 117/170 (68.82%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 FYPA+DVKKPLVN+RKPKPTKL+ASITPGTVLIIL GRFKGKRVVFLKQ FKINGVPLRRVNQ YVIGT TK+DISGVN +KFDDKYF K K+VDA LIK+IEAVP+LK YLG RFSL GMKPHELVF Sbjct: 64 FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.415e-49 Identity = 109/170 (64.12%), Postives = 115/170 (67.65%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 FYPA+DVKKPL N+R KPTKLRASITPGTVLIIL GRFKGKRVVFLKQ FKINGVPLRRVNQ YVIGT TKVDISGV +DKFDDKYF K K+VDA LIKAIEAVP+LK YLG RFSL+ GMKPHELVF Sbjct: 64 FYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 5.376e-49 Identity = 108/170 (63.53%), Postives = 114/170 (67.06%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 FYPA+DVKKPL N+R KP KLRASITPGTVLIIL GRFKGKRVVFLKQ FKINGVPLRRVNQ YVIGT TKVDISGV +DKFDDKYF K K+VDA LIKAIEAVP+LK YLG RFSL+ GMKPHELVF Sbjct: 64 FYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 125.946 bits (315), Expect = 2.348e-28 Identity = 75/170 (44.12%), Postives = 93/170 (54.71%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 +YP++DV P ++ +P KLRAS+ PGTVLI+L GRF+GKRVV+LK FK+NGVPLRRVN YVI T TKV + GVNV+KF+ +YF KE K VD L+ I+ P LK YL FSL+ G KPH L F Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27 Identity = 75/170 (44.12%), Postives = 92/170 (54.12%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 +YP++DV ++ +P KLRAS+ PGTVLI+L GRF+GKRVV+LK FK+NGVPLRRVN YVI T TKV + GVNV+KF+ +YF KE K VD LI I+ P LK YL FSL+ G KPH L F Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24 Identity = 69/171 (40.35%), Postives = 93/171 (54.39%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFT-KVDISGVNVDKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 +YPA P ++ +PTKLRAS+ PGTV I+L GRF+GKRVV L Q +K+NGVP+RRVN YVI T K+D+SGV+V+KF YF K+ K+VDA L+ AI+A+P++K YL F+L G +PH + F Sbjct: 27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQ-LEDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 111.309 bits (277), Expect = 5.985e-24 Identity = 71/176 (40.34%), Postives = 96/176 (54.55%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNV-DKFDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 +YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRV+FLKQ +N VPLRR +Q +VI T TK+DISGV + + D YF K+ K+VD+ +++ I+AVP L+ YL F+L G+ PH+LVF Sbjct: 111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKK-KLRKPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 110.923 bits (276), Expect = 7.817e-24 Identity = 74/176 (42.05%), Postives = 95/176 (53.98%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDK-FDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 +YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQ +N VPLRR +Q +VI T TKVDIS V + K D YF K+ K+VD+ ++ I+AVP L+ YL +FSL GM PH+LVF Sbjct: 125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKK-PLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
BLAST of CB291121 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 110.923 bits (276), Expect = 7.817e-24 Identity = 75/176 (42.61%), Postives = 94/176 (53.41%), Query Frame = -2 Query: 222 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILVGRFKGKRVVFLKQXXXXXXXXXXXFKINGVPLRRVNQFYVIGTFTKVDISGVNVDK-FDDKYFPKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSVDAPLIKAIEAVPDLKAYLGGRFSLRAGMKPHELVF 731 +YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQ IN VPLRR +Q +VI T TKVDIS V + K D YF K+ K+VD ++ I+AVP L+ YL +FSL GM PH+LVF Sbjct: 123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKK-QLRKPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296 The following BLAST results are available for this feature:
BLAST of CB291121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CB291121 ID=CB291121; Name=CB291121; organism=Citrus sinensis; type=EST; length=774bpback to top |