CB291122

Overview
NameCB291122
Unique NameCB291122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.789e-39
Identity = 77/173 (44.51%), Postives = 118/173 (68.21%), Query Frame = -3
Query:  317 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLVA 835
            +N+Y FG+L+A+PI+ +L G++  WL   L+AFN GD+ +++ L   H   +  Q A+  N +KL +KI+IL L+E+ F  PS+ R+I  S IA+ TKL + ++EHLLMKSLS++LI+G IDQ    +H++WV PR+L + QI S+ +R+  W  K  T+L  +E +T DLVA
Sbjct:  213 ENVYGFGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNNRIAEWTEKAKTSLRLVEDDTVDLVA 385          
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.149e-37
Identity = 78/172 (45.35%), Postives = 113/172 (65.70%), Query Frame = -3
Query:  320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835
            + ++NFGELL HP++ SL  T  +WL   L AFNSGD+ R+Q L     +A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++  VE L+MK+LSV L+ G ID+V+  VH++WVQPRVL + QIK ++DRL+ W   V +  L +E +  D++
Sbjct:  208 EGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELWCTDVKSMELLVEHQAQDIL 375          
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.077e-37
Identity = 77/172 (44.77%), Postives = 113/172 (65.70%), Query Frame = -3
Query:  320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835
            D ++NFGELL HP++ SL  T  +WL   L AFNSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA   K+++ +VE L+MK+LSV L++G ID+V+  VH++WVQPRVL + QIK ++DRL+ W   V +  + +E +  D++
Sbjct:  208 DGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375          
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.207e-36
Identity = 76/172 (44.19%), Postives = 114/172 (66.28%), Query Frame = -3
Query:  320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835
            + ++NFGELL HP++ SL  T  +WL   L AFNSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++ +VE L+MK+LSV L++G ID+V+  VH++WVQPRVL + QIK ++DRL+ W   V +  + +E +  D++
Sbjct:  208 EGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375          
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.059e-36
Identity = 76/172 (44.19%), Postives = 114/172 (66.28%), Query Frame = -3
Query:  320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835
            + +YNFGELL HP++ SL  T  +WL   L AFNSG++  +Q L     +A   QP L  NE  LL+KI +LCLME+ F+RP+  R +    IA+  K+++ +VE L+MK+LSV L++G ID+V+  VH++WVQPRVL + QIK ++DRL+ W   V +  + +E +  D++
Sbjct:  208 EGVYNFGELLMHPVLESLRSTDRQWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVRSMEMLVEHQAHDIL 375          
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.022e-35
Identity = 76/172 (44.19%), Postives = 111/172 (64.53%), Query Frame = -3
Query:  320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835
            + ++NFGELL HP++ SL  T  +WL   L AFNSG + R+Q L      A   QP L  NE +LL KI +LCLME+ F+RP+  R +    IA+  K+++  VE L+MK+LSV L+ G ID+V+  VH++WVQPRVL + QIK ++DRL+ W   V +  + +E +  D++
Sbjct:  208 EGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELWCTDVKSMEMLVEHQAQDIL 375          
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.060e-24
Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = -3
Query:  377 NIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 832
            +IYNFGELL HP+   L GT+ EWL+ ++ A N GDL  ++ L       +   P L  +   L +KI ++ L+E++F  P   RT+    IA  T++   +VE L+M++LSV LI G+ID+V   V +S VQ R+L   QI S+  RL  W
Sbjct:  214 DIYNFGELLLHPVFELLVGTQHEWLHDLVIAMNVGDLPLFERLM----GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNHSQIASMESRLREW 361          
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24
Identity = 61/167 (36.53%), Postives = 100/167 (59.88%), Query Frame = -3
Query:  338 DNIYNFGELLAHPIINSLTG-TKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEA 835
            D IYNFGELL HPI+ ++   +  +WL+ +L A   GD  ++  L +V  + +   P L ++E  L +KI ++ L+E +F +    R +    I++ T L  ++VEHL+M+++S+ L++G IDQV   V +SWVQPR++   QI  ++DRL  W  +V      +EA
Sbjct:  225 DKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVFVK--NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEA 386          
The following BLAST results are available for this feature:
BLAST of CB291122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSD13_DICDI5.789e-3944.5126S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT4.149e-3745.3526S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_BOVIN7.077e-3744.7726S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN1.207e-3644.1926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK2.059e-3644.1926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE1.022e-3544.1926S proteasome non-ATPase regulatory subunit 13 OS... [more]
RPN9_SCHPO1.060e-2440.13Probable 26S proteasome regulatory subunit rpn9 OS... [more]
RPN9_YEAST6.870e-2436.5326S proteasome regulatory subunit RPN9 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_02bf04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291122 ID=CB291122; Name=CB291122; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTAGTGAAAGCCATTATCAATTTTCAAGTGGTCTCTAAGAG
AAACTACCATAACAATGACACTAAATTGAAGGAAAGCACATGAGCTGCTC
CTTTCAGAAAAAAAAAATGATTCAGGAAAAAGGGATAAAGCAACAATTAA
AGGATTTGCATACAAAGTTGGCTCTGAATGACCTAGTAATTTCAAACTAC
CGTCTCTACCTCCTCTTTGCCGCCATTGTCATGTTTCATTTCGTTTTCTC
AAAAGACATTGTTACAAGGAGCAGAAAGGAAAACATGGAAGGAAAAAAAA
TAAAAATAAATCATGATGCAACAAGATCAGGTGTTTCAGCTTCGATGGAT
AACAAAGCAGTATGTACTTTGCCCAACCAACTGTCCAGCCGATCACGCAA
GGATTTGATCTGGGGGATTCCCAAAACTCTTGGTTGCACCCAGGACACAT
GTACTGTGCCCTCAACTTGATCAATTATACCCTCTATGAGGTGAACAGAG
AGAGACTTCATGAGAAGATGCTCAACATCCTCAATAGAAAGTTTTGTGCG
CTCTGCAATGATGCTTAATGGAATAGTTCGGTCCTCAGAAGGCCGGCTAA
AGATGATTTCCATCAGGCAGAGAATGTTAATCTTTTCCAATAGCTTCTTC
TCGTTCTCAACTAGTGCTGGTTGAGCTCTCAGAGCAGCATTGTGTACACG
GCATAATTCTTGATAGCGAACTAAGTCACCAGAGTTGAATGCCTGGAGAA
TATAGTAAAGCCACTCGACCTTTGTTCCTGTAAGACTATTTATAATAGGG
TGTGCGAGCAGTTCCCCAAAGTTGTAGATGTTATCTC
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