CB291122
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.789e-39 Identity = 77/173 (44.51%), Postives = 118/173 (68.21%), Query Frame = -3 Query: 317 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLVA 835 +N+Y FG+L+A+PI+ +L G++ WL L+AFN GD+ +++ L H + Q A+ N +KL +KI+IL L+E+ F PS+ R+I S IA+ TKL + ++EHLLMKSLS++LI+G IDQ +H++WV PR+L + QI S+ +R+ W K T+L +E +T DLVA Sbjct: 213 ENVYGFGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNNRIAEWTEKAKTSLRLVEDDTVDLVA 385
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 4.149e-37 Identity = 78/172 (45.35%), Postives = 113/172 (65.70%), Query Frame = -3 Query: 320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835 + ++NFGELL HP++ SL T +WL L AFNSGD+ R+Q L +A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ VE L+MK+LSV L+ G ID+V+ VH++WVQPRVL + QIK ++DRL+ W V + L +E + D++ Sbjct: 208 EGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELWCTDVKSMELLVEHQAQDIL 375
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 7.077e-37 Identity = 77/172 (44.77%), Postives = 113/172 (65.70%), Query Frame = -3 Query: 320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835 D ++NFGELL HP++ SL T +WL L AFNSG++ R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA K+++ +VE L+MK+LSV L++G ID+V+ VH++WVQPRVL + QIK ++DRL+ W V + + +E + D++ Sbjct: 208 DGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.207e-36 Identity = 76/172 (44.19%), Postives = 114/172 (66.28%), Query Frame = -3 Query: 320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835 + ++NFGELL HP++ SL T +WL L AFNSG++ R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ +VE L+MK+LSV L++G ID+V+ VH++WVQPRVL + QIK ++DRL+ W V + + +E + D++ Sbjct: 208 EGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 2.059e-36 Identity = 76/172 (44.19%), Postives = 114/172 (66.28%), Query Frame = -3 Query: 320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835 + +YNFGELL HP++ SL T +WL L AFNSG++ +Q L +A QP L NE LL+KI +LCLME+ F+RP+ R + IA+ K+++ +VE L+MK+LSV L++G ID+V+ VH++WVQPRVL + QIK ++DRL+ W V + + +E + D++ Sbjct: 208 EGVYNFGELLMHPVLESLRSTDRQWLIDTLYAFNSGNVETFQAL----KSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVRSMEMLVEHQAHDIL 375
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.022e-35 Identity = 76/172 (44.19%), Postives = 111/172 (64.53%), Query Frame = -3 Query: 320 DNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEAETPDLV 835 + ++NFGELL HP++ SL T +WL L AFNSG + R+Q L A QP L NE +LL KI +LCLME+ F+RP+ R + IA+ K+++ VE L+MK+LSV L+ G ID+V+ VH++WVQPRVL + QIK ++DRL+ W V + + +E + D++ Sbjct: 208 EGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGAVDRFQTL----KCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELWCTDVKSMEMLVEHQAQDIL 375
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.060e-24 Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = -3 Query: 377 NIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 832 +IYNFGELL HP+ L GT+ EWL+ ++ A N GDL ++ L + P L + L +KI ++ L+E++F P RT+ IA T++ +VE L+M++LSV LI G+ID+V V +S VQ R+L QI S+ RL W Sbjct: 214 DIYNFGELLLHPVFELLVGTQHEWLHDLVIAMNVGDLPLFERLM----GQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARATRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNHSQIASMESRLREW 361
BLAST of CB291122 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 6.870e-24 Identity = 61/167 (36.53%), Postives = 100/167 (59.88%), Query Frame = -3 Query: 338 DNIYNFGELLAHPIINSLTG-TKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTIPLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWLGKVHTALLSIEA 835 D IYNFGELL HPI+ ++ + +WL+ +L A GD ++ L +V + + P L ++E L +KI ++ L+E +F + R + I++ T L ++VEHL+M+++S+ L++G IDQV V +SWVQPR++ QI ++DRL W +V +EA Sbjct: 225 DKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKI---PILAQHESFLRQKICLMTLIETVFVK--NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEA 386 The following BLAST results are available for this feature:
BLAST of CB291122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB291122 ID=CB291122; Name=CB291122; organism=Citrus sinensis; type=EST; length=837bpback to top |