CB292802

Overview
NameCB292802
Unique NameCB292802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292802 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.578e-43
Identity = 102/190 (53.68%), Postives = 129/190 (67.89%), Query Frame = -2
Query:  211 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTSDAELWNGRFAMMGLVALAVPEFVKGSTLV 723
            S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKF D+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT         +P F+GVSVE KS   M+SDAE WNGR AM+GLVALA  EFVKG++LV
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB292802 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.718e-33
Identity = 77/157 (49.04%), Postives = 104/157 (66.24%), Query Frame = -2
Query:  211 LQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTK-FFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTSDAELWNGRFAMMGLVALAVPEFVKGSTLV 642
            ++RN   +VR M ++      +QQK Q T        P    ++TK   D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T         +P+++G+S E K++GF  SDAE+WNGRFAM+GLVALA  E+VKG  L+
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB292802 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.088e-29
Identity = 78/185 (42.16%), Postives = 103/185 (55.68%), Query Frame = -2
Query:  211 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTSDAELWNGRFAMMGLVALAVPEFVKGSTLV 762
            MA  ++  S  G++VV        +S    F + + LP       +L  R +    Q +  S  PP  P+ ST  +D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA  E + G+  +
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB292802 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.088e-29
Identity = 71/156 (45.51%), Postives = 93/156 (59.62%), Query Frame = -2
Query:  211 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTSDAELWNGRFAMMGLVALAVPEFVKGSTLV 672
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST  +D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA  E + G+  +
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of CB292802 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.968e-28
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = -2
Query:  211 PKLPRISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXVPLFKGVSVEFKSDGFMTSDAELWNGRFAMMGLVALAVPEFVKGSTLV 567
            P   + +   +D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T         +PL +G SVE KS G  ++DAELWNGRFAM+GLVALA  EF+ G+  V
Sbjct:  109 PVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB292802 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.427e-13
Identity = 61/163 (37.42%), Postives = 78/163 (47.85%), Query Frame = -2
Query:  214 SSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPR--------ISTKFFDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLF---KGVSVEFKSDGFMTSDAELWNGRFAMMGLVALAVPEFVKGSTL 669
            +S+   P  L R  +    C      + + ST PP  P          +    +V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T         +P F   KG ++     G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   16 ASINVRPAPLLRTAAPKRVCKHIVRAENNPSTPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAFARRKGDAM-----GPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of CB292802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA8.578e-4353.68Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL4.718e-3349.04Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU1.088e-2942.16Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.088e-2945.51Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU5.968e-2852.89High molecular mass early light-inducible protein ... [more]
CBR_DUNBA1.427e-1337.42Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05ac11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ac11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292802 ID=CB292802; Name=CB292802; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTCAAACGGAAAAGGGTGATTTACCCTTAAAATTG
GCATGGGAAAACAGAGATTTACATACAACCCCTCCATAATTCATACACAA
TAATTAGCCACGGAAGAAACATGACGTGCGCTTCAAGTATTAAGAATAGG
GTCTTGTTATCATTTCAAGACTCTGCAGTCCGCATATCACTGGAAAATTG
GACTTAACTAAACAAGGGTACTGCCTTTAACAAACTCAGGGACAGCCAAA
GCAACAAGACCCATCATAGCGAACCTCCCATTCCACAACTCAGCATCCGA
AGTCATGAACCCATCCGATTTAAACTCCACGCTGACACCTTTAAACAAAG
GAACCAGGGACGCAACCGAAAGCAAAACACTGGTCCCCAAAAACCAGGCA
ACTCCACCGTCTGATAACTGGGCAAACACATCCTGACCCTTGGATAGCTC
CACCGCCAATGCAGCCACAAACCCAATCATCGCAAGCCTCCCGTTTATCC
TCTCCGGTGCCGGCCCGCTGAACGCAAACACGTCAAAGAACTTCGTGCTT
ATACGCGGTAGCTTTGGTGGCTGAGTTGATTGATCCTTCTGCTGCTCATT
CTTAGCCATGCAGCGCACTGATAAGCTAACATTTCTCTGCAGAGTACCAG
GTAAGTACTTAACAGAGGAAAATTGGTACACCCCAGATTTCCTGATGCCG
GTAACACGAGCTGCGACGACAGAGCTTCCAAGCATAGATTGAGTGGCGAG
TGAAGCAGCCATTTTTGTAGATTATGCAACGGAGGAATAATTTAGCAACT
GGGAGTTTTTAGGTTAATGGGCTCCCCTCGTG
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