CB292813

Overview
NameCB292813
Unique NameCB292813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.662e-46
Identity = 92/106 (86.79%), Postives = 103/106 (97.17%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEV-NKPAKELKSSYREYLKLKTRFESLQ 694
            MGRGRVELK+I NKINRQVTFAKR+NGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS+MLKTL+RYQKC+YG++EV NKPAKEL++SYREYLKLK R+E+LQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQ 106          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.356e-45
Identity = 90/106 (84.91%), Postives = 103/106 (97.17%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEV-NKPAKELKSSYREYLKLKTRFESLQ 694
            MGRGRVELK+I NKINRQVTFAKR+NGLLKKAYELSVLCDAEV+LI+FSNRGKLYEFCS+S+MLKTLERYQKC+YG++EV NKPAKEL++SYREYLKLK R+E+LQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQ 106          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.966e-42
Identity = 82/105 (78.10%), Postives = 97/105 (92.38%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEVNKPAKELKSSYREYLKLKTRFESLQ 694
            MGRGRVELK+I NKINRQVTFAKR+NGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+S M KTLERYQ+C+YG++E ++P+KE +SSY+EYLKLK + + LQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQ 105          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEVNKPAKELK--SSYREYLKLKTRFESLQ 694
            MGRGRVELK+I NKINRQVTFAKR+NGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC YGA E N   +E    SS +EYLKLK R+E+LQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQ 107          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEVNKPAKEL----KSSYREYLKLKTRFESLQ 694
            MGRGRVELK+I NKINRQVTFAKR+NGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSML+TLERYQKC YGA E N P++E      SS +EYLKLK R+++LQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQ 109          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.457e-41
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEVNKPAKEL----KSSYREYLKLKTRFESLQ 694
            MGRGRVELK++ NKINRQVTFAKR+NGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+SSMLKTLERYQKC YGA E N  +KE      SS +EYLKLK R+ESLQ
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQ 109          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.716e-40
Identity = 85/109 (77.98%), Postives = 95/109 (87.16%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEVNKPAKEL----KSSYREYLKLKTRFESLQ 694
            MGRGRVELK+I NKINRQVTFAKR+NGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSM++TLERYQKC YG  E N P++E      SS +EYLKLK R+++LQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQ 109          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.927e-40
Identity = 87/107 (81.31%), Postives = 93/107 (86.92%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEVNKPAKELK--SSYREYLKLKTRFESLQ 694
            MGRGRVELK+I  KINRQVTFAKR+NGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC YGA E N   +E    SS +EYLKLK R+E+LQ
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQ 107          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 82/108 (75.93%), Postives = 93/108 (86.11%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEV---NKPAKELKSSYREYLKLKTRFESLQ 694
            MGRGRVELK+I NKINRQVTFAKR+NGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+ SM KTLE+YQKC+Y   E    N+ +++LK+S  EYLKLK R E+LQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQ 108          
BLAST of CB292813 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.226e-39
Identity = 82/108 (75.93%), Postives = 93/108 (86.11%), Query Frame = 2
Query:  380 MGRGRVELKKI*NKINRQVTFAKRKNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCTYGAVEV---NKPAKELKSSYREYLKLKTRFESLQ 694
            MGRGRVELK+I NKINRQVTFAKR+NGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+ SM KTLE+YQKC+Y   E    N+ +++LK+S  EYLKLK R E+LQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQ 108          
The following BLAST results are available for this feature:
BLAST of CB292813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
SEP1_ARATH4.662e-4686.79Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
SEP2_ARATH1.356e-4584.91Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
CMB1_DIACA6.966e-4278.10MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AGL9_PETHY2.027e-4182.24Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
SEP3_ARATH2.647e-4179.82Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MTF1_PEA3.457e-4179.82MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_SINAL1.716e-4077.98Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC2.927e-4081.31Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS7_ORYSJ4.226e-3975.93MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI4.226e-3975.93MADS-box transcription factor 7 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ad06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ad06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292813 ID=CB292813; Name=CB292813; organism=Citrus sinensis; type=EST; length=696bp
GCACTATGCTAAACTCTCTCTCATTATTTCATTTTCGATTTCATTTATAG
TGTAAGATCAAAATACAAAGCACGAAAAACAAACACAATTCACTTAAAAA
GGTTTCTCTTCAAATCTCTTTTTTTTTTAAAAAAAAAAAATATTATTTTT
GGTTTTTTTTTTTCTCTCTCTAGGGTTTCCAAGTGTCCAATACAATCTTA
TATCTTTCACATAATTGGATGCAACTGAGTACTGACTCTTAAAAAGAAAG
CTGAGCTTCTTCCCAACATAAGGAGAGAATTAACTTGTAAGAAGAACAAG
AAAAATTAATTTTTTTTTTTTTTAAAAAAAAAAGGGGGAAAGAAAGAAAG
TGTAGCTAGGTGAGAGGAAAATAGAGGATATGGGAAGAGGGAGGGTTGAG
TTGAAGAAAATATAGAACAAGATAAACAGGCAAGTGACGTTTGCTAAGAG
AAAAAATGGGTTGTTGAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATG
CTGAGGTGGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTACGAGTTT
TGTAGCAGCTCTAGCATGCTCAAGACCCTTGAAAGGTACCAGAAATGCAC
CTACGGTGCAGTGGAAGTCAATAAGCCAGCAAAGGAGCTCAAGAGCAGCT
ACCGGGAGTACTTGAAACTGAAAACAAGATTTGAGTCCTTGCAGCG
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