CB292867

Overview
NameCB292867
Unique NameCB292867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: NFS1_ARATH (Cysteine desulfurase 1, mitochondrial OS=Arabidopsis thaliana GN=NIFS PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.334e-76
Identity = 142/169 (84.02%), Postives = 156/169 (92.31%), Query Frame = -3
Query:  391 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 897
            RG+RSGT  T  IVGFG+ACE+A KEM+YD K I  L +RLLNG++EKLDGVVVNGSM+ RY+GNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT+ E+D+A+ELTVKQVEKLREMSPLYEMVKEGIDIK IQW+QH
Sbjct:  285 RGLRSGTGATQQIVGFGAACELAMKEMEYDEKWIKGLQERLLNGVREKLDGVVVNGSMDSRYVGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTKEEIDKAVELTVKQVEKLREMSPLYEMVKEGIDIKNIQWSQH 453          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: NFS1_PONAB (Cysteine desulfurase, mitochondrial OS=Pongo abelii GN=NFS1 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.209e-63
Identity = 114/169 (67.46%), Postives = 144/169 (85.21%), Query Frame = -3
Query:  391 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 897
            RG+RSGT+PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  E  Y G +NLSFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFG+GRFTTE EVD  +E  ++ V++LREMSPL+EMV++GID+K I+W QH
Sbjct:  289 RGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPEHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGVGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: NFS1_HUMAN (Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3)

HSP 1 Score: 241.506 bits (615), Expect = 4.921e-63
Identity = 114/169 (67.46%), Postives = 144/169 (85.21%), Query Frame = -3
Query:  391 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 897
            RG+RSGT+PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  +  Y G +NLSFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE EVD  +E  ++ V++LREMSPL+EMV++GID+K I+W QH
Sbjct:  289 RGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: NFS1_RAT (Cysteine desulfurase, mitochondrial OS=Rattus norvegicus GN=Nfs1 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.166e-62
Identity = 113/169 (66.86%), Postives = 144/169 (85.21%), Query Frame = -3
Query:  391 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 897
            RG+RSGT+PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  ++ Y G +NLSFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE EVD  ++  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:  283 RGMRSGTVPTPLVVGLGAACELAQQEMEYDHKRISKLAERLIQKIMKNLPDVVMNGDPKQHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVQKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: NFS1_MOUSE (Cysteine desulfurase, mitochondrial OS=Mus musculus GN=Nfs1 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.068e-61
Identity = 113/169 (66.86%), Postives = 142/169 (84.02%), Query Frame = -3
Query:  391 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 897
            RG+RSGT+PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  ++ Y G +NLSFAYVEGESLLM LK+VA+SSGSACTSASLEPSYV RA+G DED+AH+SIRFGIGRFTTE EVD   E  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:  283 RGMRSGTVPTPLVVGLGAACELAQQEMEYDHKRISKLAERLVQKIMKNLPDVVMNGDPKQHYPGCINLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVFRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTAEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: NFS1_DICDI (Probable cysteine desulfurase, mitochondrial OS=Dictyostelium discoideum GN=nfs1 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.651e-60
Identity = 112/168 (66.67%), Postives = 140/168 (83.33%), Query Frame = -3
Query:  394 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQ 897
            RGIRSGT+P+ L VG G+AC+IA KEM++D   +  L+DRLL GI + +  V VNG +  RY GNLN+SF+YVEGESLLM +K+VA SSGSACTS+SLEPSYVLR+LGV+EDMAH+SIRFGIGRFTTE E+D  IE+  K V++LR+MSPL+EMV+EGIDIK I+W+Q
Sbjct:  282 RGIRSGTVPSTLAVGLGAACDIALKEMNHDAAWVKYLYDRLLKGITDNIPNVKVNGDLNARYYGNLNISFSYVEGESLLMAIKDVACSSGSACTSSSLEPSYVLRSLGVEEDMAHSSIRFGIGRFTTEQEIDYTIEILKKNVQRLRDMSPLWEMVQEGIDIKTIEWSQ 449          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: ISCS_RICCK (Cysteine desulfurase OS=Rickettsia canadensis (strain McKiel) GN=iscS PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.935e-59
Identity = 107/169 (63.31%), Postives = 143/169 (84.62%), Query Frame = -3
Query:  391 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 897
            RG+RSGTLPTPLIVG G A EIA  EM+ D+K ++ L DR LN IK+K+  V +NG  ++RY GNLNLSFA VEGES+++ +K++AVSSGSACTSASLEPSYVLR++G+ E++AHTSIRFGIG+FTTE E+D A++L   +++KLRE+SPL+EM+++GID+K+I+WA H
Sbjct:  242 RGMRSGTLPTPLIVGLGMAAEIAYNEMEKDNKHVSYLFDRFLNNIKQKISEVYLNGDKDQRYKGNLNLSFAGVEGESIILAIKDLAVSSGSACTSASLEPSYVLRSMGIGEELAHTSIRFGIGKFTTEQEIDYAVDLICSKIDKLRELSPLWEMMQQGIDLKKIKWASH 410          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: ISCS_RICAE (Cysteine desulfurase OS=Rickettsia africae (strain ESF-5) GN=iscS PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.766e-58
Identity = 109/169 (64.50%), Postives = 138/169 (81.66%), Query Frame = -3
Query:  391 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 897
            RGIRSGTLPTPLIVG G A EIA  EM+ D K I  L DR LN I +++  V +NG   +RY GNLNLSFA VEGES+++ +K++AVSSGSACTSASLEPSYVLR++G+ E++AHT+IRFGIGRFTTE EVD A+ L   +++KLRE+SPL+EM++EGID+K+I+WA H
Sbjct:  242 RGIRSGTLPTPLIVGLGMAAEIAYSEMEKDTKHINYLFDRFLNNIHKRISKVYLNGDKNQRYKGNLNLSFAGVEGESMILAIKDLAVSSGSACTSASLEPSYVLRSMGIGEELAHTAIRFGIGRFTTEQEVDYAVNLICSKIDKLRELSPLWEMMQEGIDLKKIKWAVH 410          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: NFS1_DROME (Probable cysteine desulfurase, mitochondrial OS=Drosophila melanogaster GN=CG12264 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.130e-58
Identity = 112/169 (66.27%), Postives = 135/169 (79.88%), Query Frame = -3
Query:  391 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 897
            RG+RSGT+P PL VG G+A E++ +EMDYD K +  L +RLL+ I   L  V+ NG  +  Y G LNLSFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTT  EVD   +  +K VE+LREMSPL+EMV+EGID+K IQW+QH
Sbjct:  294 RGLRSGTVPAPLAVGLGAAAELSLREMDYDKKWVDFLSNRLLDRISSALPHVIRNGDAKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQEGIDLKTIQWSQH 462          
BLAST of CB292867 vs. ExPASy Swiss-Prot
Match: ISCS_ANADE (Cysteine desulfurase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=iscS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 8.130e-58
Identity = 111/167 (66.47%), Postives = 138/167 (82.63%), Query Frame = -3
Query:  397 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWA 897
            RG RSGTL  P IVG G A E+A+ E D +  R+TAL +RL  G++++LD + VNGS+E R  GNLN+SFAYVEGE+L+M +K+VAVSSGSACTSASLEPSYVLRA+GV ED+AH+SIRFG+GRF+TE EVD AI L  ++V KLREMSPLYEMVK+G+D+ QI+WA
Sbjct:  235 RGFRSGTLNVPGIVGMGKAAELARLERDAEAVRVTALRERLRKGLEQELDLLTVNGSLEHRVPGNLNVSFAYVEGEALMMAVKDVAVSSGSACTSASLEPSYVLRAMGVSEDLAHSSIRFGLGRFSTEEEVDYAIRLFGEKVRKLREMSPLYEMVKDGVDLNQIEWA 401          
The following BLAST results are available for this feature:
BLAST of CB292867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
NFS1_ARATH1.334e-7684.02Cysteine desulfurase 1, mitochondrial OS=Arabidops... [more]
NFS1_PONAB2.209e-6367.46Cysteine desulfurase, mitochondrial OS=Pongo abeli... [more]
NFS1_HUMAN4.921e-6367.46Cysteine desulfurase, mitochondrial OS=Homo sapien... [more]
NFS1_RAT4.166e-6266.86Cysteine desulfurase, mitochondrial OS=Rattus norv... [more]
NFS1_MOUSE2.068e-6166.86Cysteine desulfurase, mitochondrial OS=Mus musculu... [more]
NFS1_DICDI6.651e-6066.67Probable cysteine desulfurase, mitochondrial OS=Di... [more]
ISCS_RICCK1.935e-5963.31Cysteine desulfurase OS=Rickettsia canadensis (str... [more]
ISCS_RICAE4.766e-5864.50Cysteine desulfurase OS=Rickettsia africae (strain... [more]
NFS1_DROME8.130e-5866.27Probable cysteine desulfurase, mitochondrial OS=Dr... [more]
ISCS_ANADE8.130e-5866.47Cysteine desulfurase OS=Anaeromyxobacter dehalogen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ag02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ag02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292867 ID=CB292867; Name=CB292867; organism=Citrus sinensis; type=EST; length=899bp
TTTTTTTTTTTTTTTTTGACCCTAAAAAAGTATTGACGTCCCTTTTTATT
CCAGTGAGTAAAATAGAAGTAGTGACAAGGCATATGTTACAAATCCAAAA
GGGAGTATAACCAGTTAACCACCACAACTACATAAAAACCAACAAGTACA
TTACGCCCCAAGTCTAGATGGTAAGGCATAAAGTTTATATCAGCAACAAA
GAAAAATCTAAGACAGCGTCATCTTTCAAAATTATATTATAGGACACTAT
GAAAGCTCTCATCAGATTAAGGCATGTACAAGCACAACGGGAAGAAACCT
GGATTAAAACTCAAAGGGGGTTATCTGCTCTACTCACAGGTCTGCCTTTT
CACTTGACACACATACAATTTCACATCAACAGCCGCCTCAGTGTTGAGCC
CATTGTATCTGCTTTATATCAATTCCTTCTTTCACCATCTCATATAGCGG
GCTCATTTCCCTCAACTTCTCAACCTGCTTCACTGTAAGCTCAATAGCCC
TATCAACCTCCGCCTCCGTAGTAAACCTCCCAATCCCAAACCTAATCGAA
GTATGTGCCATATCCTCGTCCACACCTAATGCCCTCAGAACATATGATGG
CTCCAAACTTGCACTTGTACATGCACTTCCGCTAGAGACTGCCACCTCCT
TCAACCCCATCAACAAACTCTCTCCTTCAACATAAGCAAATGACAAGTTC
AAATTCCCTATGTACCTCCTCTCCATACTCCCATTTACCACCACTCCATC
AAGTTTTTCCTTAATTCCATTCAATAACCGGTCATGCAAAGCAGTAATCC
TCTTATGATCATAGTCCATCTCCTTTTTTGCAATCTCACAGGCCGAGCCA
AATCCCACAATTAACGGTGTAGGCAAGGTGCCACTCCTTATCCCTCTCT
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