CB292962

Overview
NameCB292962
Unique NameCB292962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 2.568e-96
Identity = 173/179 (96.65%), Postives = 177/179 (98.88%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF ELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF +YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG
Sbjct:  258 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.403e-94
Identity = 168/179 (93.85%), Postives = 176/179 (98.32%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GVLKPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF E++TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF +YPPLGRFAVRDMRQTVAVGVIKNV+KKDPTG
Sbjct:  258 GVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 4.100e-94
Identity = 168/179 (93.85%), Postives = 175/179 (97.77%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GV+KPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VAS SKDDPA+EAA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF ELVTKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  258 GVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.354e-94
Identity = 167/179 (93.30%), Postives = 175/179 (97.77%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GV+KPGM+VTF P+GLTTEVKSVEMHHEAL EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF +YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  258 GVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.354e-94
Identity = 168/179 (93.85%), Postives = 174/179 (97.21%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GV+KPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF E+ TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  258 GVIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFMSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.193e-93
Identity = 165/179 (92.18%), Postives = 176/179 (98.32%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GV+KPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+ AA+FT+QVIIMNHPGQIGNGYAPVLDCHTSHIAVKF E++TKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETF +YPPLGRFAVRDMRQTVAVGV+KNV+KKDPTG
Sbjct:  258 GVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 2.035e-93
Identity = 167/179 (93.30%), Postives = 174/179 (97.21%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            G+LKPGMVVTFGP+GLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG VASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF E++TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK+VEKKDP+G
Sbjct:  258 GILKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.722e-92
Identity = 167/179 (93.30%), Postives = 172/179 (96.09%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GV+KPGMVVTFGP+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF ELVTKIDRRSGKELE  PKFLKNGDAG+VKMIPTKPMVVETF  YPPLGRFAVRDMRQTVAVGVIK VEKKDPTG
Sbjct:  258 GVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDPTG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 2.938e-92
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GVLKPGMVVTF P+GLTTEVKSVEMHHE+L EA PGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVII+NHPGQIGNGYAPVLDCHTSHIAVKF EL+TKIDRRSGKELEKEPKFLKNGDAG VKMIPTKPMVVETF +YPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG
Sbjct:  258 GVLKPGMVVTFAPTGLTTEVKSVEMHHESLTEAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIINHPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 436
[Close]
BLAST of CB292962 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.904e-91
Identity = 163/179 (91.06%), Postives = 172/179 (96.09%), Query Frame = -3 
Query:  221 GVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFCELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFCDYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTG 757
            GV+KPGM+VTF P+GLTTEVKSVEMHHEAL EALPGDNV FNVKNVAVKDLK G VASNSKDDPA++AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF EL+TKIDRRSGKE+EKEPKFLKNGDAGMVKMIPTKPMVVETF +YPPLGRFAVRDMRQTVAVGVIK+VEKKDPTG
Sbjct:  258 GVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 436
The following BLAST results are available for this feature:
BLAST of CB292962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
EF1A_ORYSJ2.568e-9696.65Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_TOBAC2.403e-9493.85Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_MAIZE4.100e-9493.85Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_VICFA5.354e-9493.30Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A2_DAUCA5.354e-9493.85Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]
EF1A_SOLLC1.193e-9392.18Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_MANES2.035e-9393.30Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_WHEAT1.722e-9293.30Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_SOYBN2.938e-9292.18Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_PEA1.904e-9191.06Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05bd02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05bd02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292962 ID=CB292962; Name=CB292962; organism=Citrus sinensis; type=EST; length=759bp
GCCCCACCGCCTGTCGAGCACCCAATTCTGGGAATCGGGACCCGACACCA
AAGGCAACAAACTAAAACCTAAAGAGGAAAGCATGCATCGAACTATAACG
GTACCAAAAATAACCAGGGTTGTATAACTACAATTATTAAAATAGCACTC
CATCTGCGGATAAAGCAACATGAACCAACCCGATTCACTTCTTCTTGGCT
GCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTT
AATCACACCAACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGAC
CAAGAGGTGGGTAGTCACAGAAGGTTTCAACAACCATGGGCTTGGTGGGA
ATCATCTTAACCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTT
CTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCACAAA
ACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCA
TTTCCAATCTGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTT
GGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAACCAC
GCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCA
CCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATCTCAACAGACTTAAC
CTCAGTTGTCAATCCAGAGGGGCCAAATGTCACCACCATACCAGGCTTGA
GGACACCGG
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