CB293018

Overview
NameCB293018
Unique NameCB293018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.726e-44
Identity = 97/153 (63.40%), Postives = 107/153 (69.93%), Query Frame = -3
Query:   50 MSLIPSIFGNR--SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIPS FG R  SVFDPFS DVW P        S S E S F S +VDWKETPEAHVFKAD+PGL         +DGRVLQISGER+VEKEDKND W RVE           LPENA++DQVKASMENGVL VTVP+ E KKP+VK+I I+G
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.375e-43
Identity = 95/154 (61.69%), Postives = 113/154 (73.38%), Query Frame = -3
Query:   50 MSLIPSIFGNR---SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIP IFG+R   S+FDPFS DV+ P       G++S E S FA+ ++DWKETPEAHVFKADLPGL         E+ RVLQISGER++EKEDKNDKW+RVE           LPENA++DQVKASMENGVL VTVP+ E KKP+VKSI+I+G
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.423e-42
Identity = 95/158 (60.13%), Postives = 106/158 (67.09%), Query Frame = -3
Query:   50 MSLIPSIFGNR--SVFDPFSSDVWAPL-----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIPS FG R  +VFDPFS DVW P             S   E S F S +VDWKETPEAHVFKADLPG+         ED RVLQISGERSVEKEDKND+W R+E           LPENA++DQVKA+MENGVL VTVP+ E KKPEVK+I I+G
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.545e-42
Identity = 93/153 (60.78%), Postives = 108/153 (70.59%), Query Frame = -3
Query:   50 MSLIPSIFGNR--SVFDPFSSDVWAPLG------SSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIPSIFG R  +VFDPFS DVW P        S S E S F + +VDWKETPEAHVF+AD+PGL         ED RVLQISGER++EKEDKND W RVE           LPENA+++QVKASMENGVL VTVP+ E KKP+VK+I+I+G
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.545e-42
Identity = 96/154 (62.34%), Postives = 110/154 (71.43%), Query Frame = -3
Query:   50 MSLIPSIFGNR---SVFDPFSSDVWAP---LG---SSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIP IFG+R   SVFDPFS DV+ P   LG   S+S E S FA+ ++DWKETPEAHVFKADLPGL         E+ RVLQISGER+VEKEDKND W RVE           LPENA++DQVKASMENGVL VTVP+ E   P+VKSI+I+G
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.545e-42
Identity = 93/154 (60.39%), Postives = 109/154 (70.78%), Query Frame = -3
Query:   50 MSLIPSIFGNR---SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIP IFG+R   S+FDPFS DV+ P        ++S E S FA+ ++DWKETPE HVFK DLPGL         E+ RVLQISGER+VEKEDKNDKW R+E           LPENA++DQVKASMENGVL VTVP+ E KKPEVKSI+I+G
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.681e-41
Identity = 92/154 (59.74%), Postives = 106/154 (68.83%), Query Frame = -3
Query:   50 MSLIPSIFGNR--SVFDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIP  FG R  +VFDPFS D+W        P  S S E S F S +VDWKETPEAHVFKAD+PGL         ED RVLQISGER+VEKEDKND W RVE           LPENA++++VKASMENGVL VTVP+ E KKP+VK+I+I+G
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.867e-41
Identity = 96/158 (60.76%), Postives = 105/158 (66.46%), Query Frame = -3
Query:   50 MSLIPSIFGNR--SVFDPFSSDVWAPL-----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIPS F  R  +VFDPFS DVW PL            S   E   F S +VDWKETPEAHVFKADLPGL         ED RVLQISGERSVEKEDKND+W RVE           LPENA++D+VKASMENGVL VTVP+ E KK EVKSI+I+G
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 4.891e-41
Identity = 91/157 (57.96%), Postives = 109/157 (69.43%), Query Frame = -3
Query:   50 MSLIPSIFGNR--SVFDPFSSDVWAPL----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIPSIFG R  +VFDPFS DV+ P            + + +V+ F +A+VDW+ETPEAHVFKADLPGL         EDG +LQISGERS E E+KNDKW RVE           LPENA+++++KASMENGVL VTVP+V EKKPEVKSI I+G
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CB293018 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.388e-41
Identity = 94/161 (58.39%), Postives = 109/161 (67.70%), Query Frame = -3
Query:   50 MSLIPSIFGNR--SVFDPFSSDVWAP---------LGSSS-----NEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXLPENAQIDQVKASMENGVLPVTVPQVEEKKPEVKSIQITG 484
            MSLIP+ FG R  +VFDPFS DVW P         L S+S      E S F S +VDWKETPEAHVFKAD+PGL         ED +VLQISGER+VEKEDKND W RVE           LPENA+++QVKASMENGVL VTVP+ E KKP+VK+I+I+G
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
The following BLAST results are available for this feature:
BLAST of CB293018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HSP11_SOYBN4.726e-4463.4017.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE1.375e-4361.6917.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_MEDSA4.423e-4260.1318.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP13_SOYBN7.545e-4260.7817.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE7.545e-4262.3417.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC7.545e-4260.3917.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP14_SOYBN1.681e-4159.7417.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.867e-4160.7618.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS17C_ARATH4.891e-4157.9617.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP16_SOYBN6.388e-4158.3918.5 kDa class I heat shock protein OS=Glycine max... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05bg05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05bg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293018 ID=CB293018; Name=CB293018; organism=Citrus sinensis; type=EST; length=555bp
AACAAAAGAAGAACCAAATTATAAAGGCTGCAATTAACGGACAGTTTCAA
CCCGTGATCTGAATGGATTTGACCTCAGGCTTCTTCTCCTCCACTTGGGG
AACAGTGACGGGGAGGACACCATTCTCCATGGATGCCTTAACTTGATCGA
TCTGGGCATTCTCAGGCAACCGGAACCTCCTCAAGAACTTGCCGCGGCCC
CTCTCAACACGCCGCCATTTGTCGTTCTTGTCTTCCTTCTCGACGCTCCT
CTCACCGCTGATCTGAAGGACTCTCCCGTCCTCAACTTCAACCTTCACTT
CCTCTTTCTTGAGCCCCGGAAGATCCGCCTTGAAAACATGAGCTTCCGGG
GTTTCTTTCCAATCGACTTGAGCACTGGCAAATGTTGACACCTCATTGCT
GGAGGAGCCAAGGGGCGCCCAAACGTCCGAGGAAAATGGGTCGAACACGC
TCCTGTTTCCGAATATAGATGGAATCAAAGACATTTTTGCTTAATCAAAG
CGACGAGCACTTTCTTCGAAATCGTTTGCTTATTTATCTATTGGGTCTCC
TCGGG
back to top