CB293047

Overview
NameCB293047
Unique NameCB293047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293047 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 GGLSTEGEPEFTTTDPVTEVVVKPPSKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPNAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQ 306
            GGLS +      T + +TE +VKP + YT+E+P +E   L WELRVLG DVSYGA+F P  EGSY VIVSKTRK+  TDEPVI D+FK+GEPGK+V+TIDNQ
Sbjct:  461 GGLSKDTP---LTEETITEAIVKPAANYTIELPASEACTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKVGEPGKIVITIDNQ 559          
BLAST of CB293047 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.469e-29
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    1 GGLSTEGEPEFTTTDPVTEVVVKPPSKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPNAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQ 306
            GGLS +    FT  D VTE VVK  SKYT+++P TE S L WELRVLG DVSYGA+F P+ E SYTVIVSK RKV  TDEPVI D+FK  E GKVV+TIDNQ
Sbjct:  569 GGLSKDSP--FTVEDGVTEAVVKSTSKYTIDLPATEGSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKASEAGKVVITIDNQ 668          
BLAST of CB293047 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.867e-25
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 GGLSTEG---EPEFTTTDPVTEVVVKPPSKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPNAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 303
            GGLS +     P+F+  D  +E+ VKP +K TVEI + E+  LVWE+RV GW+VSY AEFVP  + +YTV++ K RK+ P+DEPV+  +FK+ E GKV+LT+DN
Sbjct:  370 GGLSVDPCDCNPDFSLEDSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDN 473          
BLAST of CB293047 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.407e-24
Identity = 53/104 (50.96%), Postives = 73/104 (70.19%), Query Frame = 1
Query:    1 GGLSTEG---EPEFTTTDPVTEVVVKPPSKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPNAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 303
            GGLS +      +FT  D  TE+ VKP +K TVEI V E+  +VWE+RV+GW+VSYGAEFVP  +  YTVI+ K RK+   +E V+  +FK+GE G+++LT+DN
Sbjct:  545 GGLSVDNCECNSDFTHDDIATEITVKPTTKQTVEIIVYEKCTIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRILLTVDN 648          
BLAST of CB293047 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 GGLSTEGEPEFTTTDPVTEVVVKPPSKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPNAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 303
            GG  T  + EF+  + V+EVVVKP S  T+EIP  E    LVW++ VLGW+V+Y  EFVP  EG+YTVIV K +K+   + P I ++FK  + GK+VLT+DN
Sbjct:  421 GGFKTVDDTEFSN-ETVSEVVVKPGSSETIEIPAPETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKMGANEGP-IRNSFKNSQAGKIVLTVDN 520          
BLAST of CB293047 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 40/102 (39.22%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 GGLSTEGEPEFTTTDPVTEVVVKPPSKYTVEIPVTER-SILVWELRVLGWDVSYGAEFVPNAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDN 303
            GGLS   + +     P +E  +K   K  ++I   E  + + W++ V GWD+ Y AEFVPNAE SY ++V K +K+  TDE  +C++F   E GK++L++DN
Sbjct:  287 GGLSRPTDSQNGPPKPASEFSIKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDE-AVCNSFTTVEAGKLILSVDN 387          
The following BLAST results are available for this feature:
BLAST of CB293047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL1_ARATH3.866e-3061.76Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL2_ARATH1.469e-2966.67Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL3_ARATH2.867e-2551.92Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL5_ARATH5.407e-2450.96Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL4_ARATH6.187e-2050.00Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL6_ARATH7.826e-1539.22Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_05bh12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05bh12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293047 ID=CB293047; Name=CB293047; organism=Citrus sinensis; type=EST; length=628bp
GGTGGATTGAGTACGGAGGGTGAGCCCGAATTTACAACAACTGACCCTGT
TACTGAGGTTGTCGTCAAGCCACCTAGCAAATACACTGTTGAAATCCCCG
TTACTGAGAGAAGTATTCTTGTGTGGGAACTCCGAGTTTTGGGTTGGGAT
GTGAGCTACGGAGCTGAATTTGTGCCTAATGCCGAAGGCAGCTACACTGT
AATAGTGTCAAAGACTAGGAAGGTCGCGCCAACTGATGAACCGGTCATCT
GCGACACATTCAAAATTGGCGAACCCGGCAAGGTGGTTCTCACCATTGAT
AACCAGTCCTCGAAGAAGAAGAAGCTCCTATATAGGTCCAAGACCAAGCC
CTCCTCTGATTAAATCAATCTATGAAGGCCATTGCATTGCACAATAAGAA
AAGGGTTCTTTTATTTCTATGATAGAGGTTATTTTATTTTATTTGTTGGA
ATTTAATTTTATAAAAAAATTTAAACTTTGGGGGATTTCATTTATATTAT
TTTTTTTGAATTAGTTTTTGGGGATTTTTGGTGGTTTGGTTTTGTTGGAT
GCTATGGGTGGAGACCGGACACGGCGTGGAATCTGGACAGAAACTTTGTT
GTTATTCTTGAATCATGATATACTCTGC
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