CB293060

Overview
NameCB293060
Unique NameCB293060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.699e-38
Identity = 83/109 (76.15%), Postives = 85/109 (77.98%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVIN+DL T PEN L  IG SGRFGRKGV INFV RDDERMLFDIQKFYNVV+ ELPSNVA L
Sbjct:  303 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADL 411
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.750e-38
Identity = 83/109 (76.15%), Postives = 85/109 (77.98%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN L  IG SGRFGRKGV INFV +DDERMLFDIQKFYNVVI ELP+NVA L
Sbjct:  145 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 253
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 8.750e-38
Identity = 83/109 (76.15%), Postives = 85/109 (77.98%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN L  IG SGRFGRKGV INFV RDDERMLFDIQ+FYNVVI ELP+NVA L
Sbjct:  305 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADL 413
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.750e-38
Identity = 83/109 (76.15%), Postives = 85/109 (77.98%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN L  IG SGRFGRKGV INFV +DDERMLFDIQKFYNVVI ELP+NVA L
Sbjct:  304 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADL 412
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.750e-38
Identity = 83/109 (76.15%), Postives = 85/109 (77.98%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN L  IG SGRFGRKGV INFV +DDERMLFDIQKFYNVVI ELP+NVA L
Sbjct:  304 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 412
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.143e-37
Identity = 83/109 (76.15%), Postives = 84/109 (77.06%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN L  IG SGRFGRKGV INFV  DDERMLFDIQKFYNV+I ELPSNVA L
Sbjct:  304 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADL 412
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.546e-37
Identity = 82/109 (75.23%), Postives = 84/109 (77.06%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN L  IG SGRFGRKGV INFV RDDERMLFDIQ+FYNV I ELP+NVA L
Sbjct:  305 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADL 413
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.671e-37
Identity = 82/109 (75.23%), Postives = 84/109 (77.06%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN    IG SGRFGRKGV INFV R+DERMLFDIQKFYNVVI ELP+NVA L
Sbjct:  305 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADL 413
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 82/109 (75.23%), Postives = 84/109 (77.06%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN L  IG SGRFGRKGV IN V +DDERMLFDIQKFYNVVI ELP+NVA L
Sbjct:  304 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADL 412
[Close]
BLAST of CB293060 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.407e-37
Identity = 82/109 (75.23%), Postives = 84/109 (77.06%), Query Frame = -2 
Query:  219 HTVFALHGDRDQTPRDIIRGEFRLGFFGVFIPTDLLVRGIDVQQVSLVINYDLRTHPENSLPLIGGSGRFGRKGVPINFVPRDDERMLFDIQKFYNVVIGELPSNVAAL 545
            HTV A HGD DQ  RDII  EFR G   V I TDLL RGIDVQQVSLVINYDL T PEN L  IG SGRFGRKGV INFV +DDERML DIQKFYNVVI ELP+NVA L
Sbjct:  304 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADL 412
The following BLAST results are available for this feature:
BLAST of CB293060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
IF4A1_ARATH6.699e-3876.15Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A6_TOBAC8.750e-3876.15Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
IF4A1_ORYSJ8.750e-3876.15Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF414_TOBAC8.750e-3876.15Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF411_TOBAC8.750e-3876.15Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF4A8_TOBAC1.143e-3776.15Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A3_ORYSJ2.546e-3775.23Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A_WHEAT5.671e-3775.23Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A2_NICPL7.407e-3775.23Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF410_TOBAC7.407e-3775.23Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ca09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ca09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293060 ID=CB293060; Name=CB293060; organism=Citrus sinensis; type=EST; length=558bp
TTTTTTTTTTTTTTTTTGCAAACGGCATGACCCCTATGATTAAATGGGCC
GATATGTTTGAAAACAACATTAATTTAAAACACTAGACGGAAAGGGAAAA
AAAACCCAAAAAAAAAAAAAAAAGGGGAGAAAATATCCCCCCCATTAAAT
AGTACTTGCAAAATCAGGAAACCCCTTCTTGGCTCGACAAACTTACAAAA
AACAAAACCTCCTCAAAAAAGGGCAGCAACATTTGAAGGGAGCTCCCCAA
TGACCACGTTATAAAACTTTTGAATATCAAAAAGCATTCTCTCATCATCC
CTTGGCACAAAATTAATGGGAACACCCTTTCTTCCAAATCGACCACTTCC
TCCAATAAGGGGAAGGGAATTTTCTGGGTGAGTCCGCAGATCATAATTTA
TGACAAGTGAAACTTGCTGCACATCAATACCCCGAACCAACAAATCAGTG
GGGATGAAAACCCCAAAAAAACCCAAGCGAAATTCCCCCCTAATGATATC
TCGGGGGGTCTGATCCCTGTCCCCATGAAGGGCAAAAACTGTATGGGCAC
CGCTTCCC
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