CB294014

Overview
NameCB294014
Unique NameCB294014
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294014_ssr98 microsatellite CB294014_ssr98:98..111. BLAST: Citrus ESTs to Prunus persica proteins V1
CB294014_ssr117 microsatellite CB294014_ssr117:117..128. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9805 contig Csv1_Contig9805:14..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.558e-72
Identity = 138/205 (67.32%), Postives = 164/205 (80.00%), Query Frame = 3
Query:  171 NNTDPQNQKTLADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAM 785
            N++  +    +A+ +P +   R+ YA   AILASMTSI+LGYDIGVMSGA+++IKDDLK+SD ++EILMGILNIYSL+GS AAGRTSDW+GRRYTIV                TNY F+M GRF AGIGVGYA+MIAPVYTAE++PAS+RGFLTSFPE+FIN GILLGYVSNY FSKLP HLGWR MLG+GA+PSV LA+GVLAM
Sbjct:    2 NSSGVEQGVVIAESEPPRG-NRSRYAFACAILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTAEVAPASSRGFLTSFPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAVPSVFLAIGVLAM 205          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 7.926e-72
Identity = 140/190 (73.68%), Postives = 152/190 (80.00%), Query Frame = 3
Query:  216 PQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAM 785
            P K PKRN YA   AILASMTSILLGYDIGVMSGA +YIK DLK++D +I IL G LNIYSLIGS AAGRTSDWIGRRYTIV                 NYAFLM GRF AGIGVGYALMIAPVYTAE+SPAS+RGFL SFPEVFIN GI+LGYVSN  FS LPL +GWR+MLGIGA+PSV+LA+GVLAM
Sbjct:   26 PAKPPKRNNYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVILAIGVLAM 215          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.495e-70
Identity = 136/195 (69.74%), Postives = 159/195 (81.54%), Query Frame = 3
Query:  201 LADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAM 785
            +A+ +P +   R+ +A   AILASMTSI+LGYDIGVMSGAA++IKDDLK+SD ++EILMGILNIYSLIGS AAGRTSDWIGRRYTIV                TNY F+M GRF AGIGVGYA+MIAPVYT E++PAS+RGFL+SFPE+FIN GILLGYVSNY F+KLP H+GWR MLGIGA+PSV LA+GVLAM
Sbjct:   12 VAESEPPRG-NRSRFAFACAILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTTEVAPASSRGFLSSFPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGIGAVPSVFLAIGVLAM 205          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.026e-55
Identity = 111/186 (59.68%), Postives = 136/186 (73.12%), Query Frame = 3
Query:  228 PKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAM 785
            P  N +A G AI+AS+ SI+ GYD GVMSGA ++I+DDLK++DT+IE+L GILN+ +L+GSL AG+TSD IGRRYTI                  NY  LM GR  AG+GVG+ALMIAPVY+AE+S AS RGFLTS PE+ I+ GILLGYVSNY F KL L LGWR+MLGI A PS++LA G+  M
Sbjct:   16 PHMNKFAFGCAIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYSAEISSASHRGFLTSLPELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFPSLILAFGITRM 201          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.240e-53
Identity = 107/196 (54.59%), Postives = 140/196 (71.43%), Query Frame = 3
Query:  201 LADFDPQKKPKR-NLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAM 785
            +AD    +KP   N +A   AI+AS+ SI+ GYD GVMSGA ++I++DLK +D +IE+L GILN+ +L+GSL AGRTSD IGRRYTIV                 NY  L+ GR  AG+GVG+ALM+APVY+AE++ AS RG L S P + I+ GILLGY+ NY FSKLP+H+GWR+MLGI A+PS++LA G+L M
Sbjct:    1 MADQISGEKPAGVNRFALQCAIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNLCALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFALMVAPVYSAEIATASHRGLLASLPHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVPSLVLAFGILKM 196          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.173e-47
Identity = 97/211 (45.97%), Postives = 134/211 (63.51%), Query Frame = 3
Query:  144 AAGLGTESNN----NTDPQNQKTLADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLL 764
            A  +G + N     ++D +  +   + + +    R  Y    A  AS+ ++LLGYD+GVMSGA L+I+ DLK+++ + E+L+G L+I SL GSLA GRTSD IGR++T+                  ++  LM GR  AGIG+G  +MIAPVY AE+SP   RGF TSFPE+FIN GILLGYVSNY FS L +H+ WR+ML +G +PSV +
Sbjct:   18 AVSVGNKKNKYQRMDSDAEESQNHREAEARNSRTRK-YVMACAFFASLNNVLLGYDVGVMSGAVLFIQQDLKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAEISPTVARGFFTSFPEIFINLGILLGYVSNYAFSGLSVHISWRIMLAVGILPSVFI 227          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.338e-23
Identity = 66/186 (35.48%), Postives = 98/186 (52.69%), Query Frame = 3
Query:  237 NLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKV---SDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAM 785
            N Y  G  + A +  +L GYD GV+SGA LYIKDD +V   S    E ++ +  + ++IG+ A G  +D+ GR+   +                 +   L+ GR   G+GVG A + APVY AE SP+  RG L S   + I GG  L Y+ N  F+++P    WR MLG+  +P+V+  + +L M
Sbjct:   28 NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVP--GTWRWMLGVSGVPAVIQFILMLFM 211          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: ITR2_SCHPO (Myo-inositol transporter 2 OS=Schizosaccharomyces pombe GN=itr2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.516e-22
Identity = 66/202 (32.67%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  162 ESNNNTDPQ-NQKTLADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLK--VSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSV 758
            E  N TDPQ N+    + +  +  K + +    + +A ++ +L GYD GV+SGA   +  DL   +S  + E++    +  +LI +  +G  +DW+GR+  ++                 N A ++ GRF  G G+G   +I P+Y  EL+PA  RG L     VFI GG L+ Y  N  F    +H GWR+M GIGA P++
Sbjct:   52 EEANATDPQANEVADENGEGFEAEKISSWIWVLSAVAGISGLLFGYDTGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEH--VHQGWRIMFGIGAAPAL 251          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.522e-22
Identity = 65/179 (36.31%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  234 RNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKI---EILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVL 761
            +N Y    A  A +  +L GYD GV+SGA LYI+DD K  D      E+++ +    +++G+   G  +D +GRR  I+                 N + L+ GR   G+GVG A M AP+Y +E SPA  RG L S     I GG  L Y+ N  F+ +     WR MLGI  IP++L
Sbjct:   24 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVT--GTWRWMLGIAGIPALL 200          
BLAST of CB294014 vs. ExPASy Swiss-Prot
Match: GTR12_XENLA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Xenopus laevis GN=slc2a12 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.283e-21
Identity = 62/198 (31.31%), Postives = 106/198 (53.54%), Query Frame = 3
Query:  192 QKTLADFDPQKKPKRN---LYASGAAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFGAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGV 776
            Q+  +D  PQ  P++     +   ++++A+++ +L+GY++G++SGA L ++  L+++  + EI++  L I +L+ SL  G   D  GRR TI+                 +Y  L+ GR   G+ +  + +   VY AELSP   RG L S  E+ I  GILL Y+ NY F+   ++ GW+ M G+    + L AV +
Sbjct:   13 QQRSSDDHPQTNPRQTGCGAFIILSSVIAAISGLLVGYELGIISGALLQLQSLLELTCQQQEIVVSALLIGALVASLVGGCLIDLYGRRTTIIFTSILLVFANLLPVVVVSYGSLIAGRIFIGVSISLSAIATCVYIAELSPQDKRGMLVSLNELMIVAGILLAYICNYLFAS--VNNGWKYMFGLITPLAALQAVAM 208          
The following BLAST results are available for this feature:
BLAST of CB294014 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PLT1_ARATH3.558e-7267.32Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLT5_ARATH7.926e-7273.68Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT2_ARATH1.495e-7069.74Putative polyol transporter 2 OS=Arabidopsis thali... [more]
PLT3_ARATH3.026e-5559.68Probable polyol transporter 3 OS=Arabidopsis thali... [more]
PLT6_ARATH8.240e-5354.59Probable polyol transporter 6 OS=Arabidopsis thali... [more]
PLT4_ARATH5.173e-4745.97Probable polyol transporter 4 OS=Arabidopsis thali... [more]
INT1_ARATH2.338e-2335.48Probable inositol transporter 1 OS=Arabidopsis tha... [more]
ITR2_SCHPO1.516e-2232.67Myo-inositol transporter 2 OS=Schizosaccharomyces ... [more]
INT2_ARATH7.522e-2236.31Probable inositol transporter 2 OS=Arabidopsis tha... [more]
GTR12_XENLA1.283e-2131.31Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cg05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cg05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294014 ID=CB294014; Name=CB294014; organism=Citrus sinensis; type=EST; length=786bp
GCACACACAAGGCTTCTTGTTTTTGTAGTAGTTTCATGGCAGCTTGAGTT
TCTATCTCTTCTTCCAAACCCTAGCTTACATAATTAAACACTCGCAGTCT
CTCTCTCTCTCGCTCTCTAGCTAGCTAGCTTAGCAACAACATGGCTGCAG
GCTTGGGAACCGAGAGCAACAACAATACTGACCCTCAAAACCAAAAAACT
CTTGCGGATTTTGATCCCCAAAAGAAACCAAAAAGAAATCTGTATGCCTC
CGGCGCTGCCATTTTGGCTTCCATGACTTCAATCTTACTAGGTTATGACA
TTGGAGTAATGAGTGGAGCTGCACTCTACATCAAAGACGACTTGAAAGTC
AGTGACACAAAAATCGAGATCTTAATGGGAATCTTGAATATTTACTCACT
CATCGGCTCACTGGCTGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGT
ACACTATCGTGTTAGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATG
GGGTTCGCCACAAACTACGCTTTCCTCATGGGGGGTCGCTTCGGCGCCGG
TATCGGCGTCGGATACGCTCTCATGATCGCTCCCGTTTACACAGCTGAAC
TTTCTCCGGCTTCTACTCGAGGCTTTCTCACCTCATTTCCTGAGGTTTTC
ATTAACGGCGGGATATTACTTGGCTACGTCTCGAACTACGGATTCTCCAA
ACTACCCCTCCACTTAGGCTGGCGCATGATGCTCGGAATCGGCGCCATTC
CGTCGGTGCTTCTCGCCGTCGGCGTGTTAGCCATGC
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