CB304492

Overview
NameCB304492
Unique NameCB304492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.780e-35
Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = -3
Query:  253 VCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 579
            +CA + C++V AP T A++CGQV++SLAPCI +L  GG  PP  CCSGV+SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:    9 LCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.868e-34
Identity = 62/104 (59.62%), Postives = 84/104 (80.77%), Query Frame = -3
Query:  253 LCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 564
            LC++V+ P+  AITCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   15 LCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.410e-33
Identity = 63/107 (58.88%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  253 ALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 573
            AL++ + +   V +AITCGQVT+SLAPCI ++R+GG  PP  CC+G+R++NG ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   10 ALVVALCMAVSVAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.020e-31
Identity = 66/108 (61.11%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  253 CALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 576
            C ++LC++V AP   AITCGQVT++LAPC+ +LR  G  P   CC GV++L  +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:    9 CFVVLCMVVAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.273e-31
Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = -3
Query:  253 CALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 576
            C +LLC++V AP   A+TCGQVTA LAPC+P+L+  GR P   CC GV++L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:    9 CFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.968e-31
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  253 CALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 576
            C +LLC++V AP   A+TCGQVTA LAPC+P+L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:    9 CFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.877e-31
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = -3
Query:  253 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 528
            ITCGQV++SLAPCI +LR GG   P  CC+GVRSLN AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.637e-31
Identity = 56/104 (53.85%), Postives = 80/104 (76.92%), Query Frame = -3
Query:  253 LCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 564
            LC++V+ P+  A+TCGQV+++LAPCI ++R GG  PP  CC+G+R++N  A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   15 LCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.924e-30
Identity = 57/107 (53.27%), Postives = 81/107 (75.70%), Query Frame = -3
Query:  253 ALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 573
            AL++ + +   V +AITC QV+A+LAPCI ++R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   10 ALVVALCMAVSVAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304492 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.282e-30
Identity = 64/110 (58.18%), Postives = 82/110 (74.55%), Query Frame = -3
Query:  253 CALLLCILVTAPVTN-AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 576
            C ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   11 CVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
The following BLAST results are available for this feature:
BLAST of CB304492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP_HELAN5.780e-3562.39Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU2.868e-3459.62Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO5.410e-3358.88Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_TOBAC1.020e-3161.11Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_SOLLC2.273e-3160.19Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN2.968e-3160.19Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
LTP1_MORNI3.877e-3167.39Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_PRUAV8.637e-3153.85Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_PYRCO1.924e-3053.27Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP2_GOSHI3.282e-3058.18Non-specific lipid-transfer protein OS=Gossypium h... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304492 ID=CB304492; Name=CB304492; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTCTTTTTTTTTTTTTTTTTTTCGCGATAATACCACAAAATA
ACTATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGA
CATAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACGAGT
GGAGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTA
TTCTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTT
CACCTGACCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCT
GACTCCACATTGACTAGGGAGGCCAGCGGCAACATTAGGTTTGATGCCGC
GGATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCA
GGGGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGG
CGGTGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCA
AGGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTC
ACCAGAATGCACAAAAGCAAAGCACAAACAA
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