CB304507

Overview
NameCB304507
Unique NameCB304507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:322..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304507 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.884e-35
Identity = 74/105 (70.48%), Postives = 84/105 (80.00%), Query Frame = -2
Query:  222 AFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 536
            AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT         +P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:   92 AFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB304507 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.298e-31
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = -2
Query:  222 FAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 539
            F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T         +P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:   92 FSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB304507 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.522e-28
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = -2
Query:  222 AFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 536
            AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T         +PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  123 AFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB304507 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.575e-25
Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = -2
Query:  222 AFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 536
            AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   65 AFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB304507 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.057e-25
Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = -2
Query:  222 AFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 536
            AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   60 AFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of CB304507 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 50/105 (47.62%), Postives = 58/105 (55.24%), Query Frame = -2
Query:  225 FSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL 533
            FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T         +P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   73 FSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of CB304507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA4.884e-3570.48Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL7.298e-3160.38Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.522e-2859.81High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.575e-2555.66Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.057e-2555.66Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA4.448e-1247.62Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_G11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_G11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304507 ID=CB304507; Name=CB304507; organism=Citrus sinensis; type=EST; length=540bp
TTTTTTTTTTTTTNNTTTTTTTTTTTTTTAAACGGAAAAGGGTGATTTAT
TTAGAGAATTGGCATGGGAAAACAGAGATTTACATACAACACCACCATAA
TTCATACACAATAATTAGCCACAGAAGAAACATGACGTGCGCTTCAAGTA
TTAAGGATAGGGTCTTGTTATCATTTCAAGACTCCGCAGTCCGCATATCA
CTGGAAAATTGGACTTAACTAAACAAGGGTACTGCCTTTAACAAACTCAG
TGACAGCCAAAGCAACAAGACCCATCATAGCGAACCTCCCATTCCACAAC
TCAGCATCCGAAGTCATGAACCCATCCGATTTAGACTCCACGCTGACACC
TTTAAACAAAGGAACCAGGGACGCAACCGAAAGCAGAACACTGGTCCCCA
AGAACCAGGCAACTCCACCGTCTGATAACTGGGCAAACACATCCTGACCC
TTGGATAGCTCCACCGCCAATGCAGCCACGAACCCAATCATCGCGAGCCT
CCCGTTTATCCTCTCCGGTGCCGGCCCGCTGAACGCAAAC
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