CB304593

Overview
NameCB304593
Unique NameCB304593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4836 contig Csv1_Contig4836:286..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = -1
Query:  321 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEVE 551
            KASAMGKNVSNAKTFLEKRY E+MELDDA+HTAILTLKEGFEG+IS              FRVLTP EI DYLAEVE
Sbjct:  159 KASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGTDKVFRVLTPAEIDDYLAEVE 235          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.141e-24
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = -1
Query:  321 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEVE 551
            KASAMGKNVSNAKTFLEKRY E+MELDDA+HTAILTLKEGFEG+IS              FRVLTP EI DYLAEVE
Sbjct:  159 KASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEIGKIGADKVFRVLTPAEIDDYLAEVE 235          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.252e-22
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = -1
Query:  321 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEVE 551
            KASAMGKNVSNAKTFLEKRY E+MELDDA+HTAILTLKEG+EGQIS             EF+VL+P EI+D+L EVE
Sbjct:  159 KASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFLEEVE 235          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.252e-22
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = -1
Query:  321 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEVE 551
            KASAMGKNVSNAKTFLEKRY E+MELDDA+HTAILTLKEG+EGQIS             EF+VL+P EI+D+L EVE
Sbjct:  159 KASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFLEEVE 235          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++              FR LTP E+RDYLA +
Sbjct:  159 KATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMT-EDNIEVGICNEAGFRRLTPTEVRDYLAAI 233          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.345e-17
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++              FR LTP E+RDYLA +
Sbjct:  159 KATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMT-EDNIEVGICNEAGFRRLTPTEVRDYLAAI 233          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.414e-16
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++              FR LTP E++DYLA +
Sbjct:  159 KATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMT-EDNIEVGICNEAGFRRLTPTEVKDYLAAI 233          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.414e-16
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++              FR LTP E++DYLA +
Sbjct:  159 KATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMT-EDNIEVGICNEAGFRRLTPTEVKDYLAAI 233          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.372e-16
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+AMGKN  N KTFLEKRY E++EL+DA+HTAILTLKE FEGQ++              F+ LTP E++DYLA +
Sbjct:  159 KATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMT-EDNIEVGICNEAGFKRLTPAEVKDYLAAI 233          
BLAST of CB304593 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.015e-16
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  324 KASAMGKNVSNAKTFLEKRYVEEMELDDAVHTAILTLKEGFEGQISXXXXXXXXXXXXXEFRVLTPNEIRDYLAEV 551
            KA+AMGKN  N KTFLEKRY E++ELDDAVHTAILTLKEGFEG+++              F+ L P  I+DYLA +
Sbjct:  159 KATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEGKMT-ADNIEIGICDQNGFQRLDPASIKDYLASI 233          
The following BLAST results are available for this feature:
BLAST of CB304593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSA2B_ARATH9.141e-2474.03Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH9.141e-2474.03Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA2_ORYSJ2.252e-2270.13Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI2.252e-2270.13Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_RAT6.345e-1759.21Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE6.345e-1759.21Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN1.414e-1657.89Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN1.414e-1657.89Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA2_XENLA5.372e-1656.58Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA2_DROME7.015e-1657.89Proteasome subunit alpha type-2 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304593 ID=CB304593; Name=CB304593; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGAGAAGAAACCGAATT
AAATCTTAAATTCTTCCATCAAAACGAATAAAACCTCCAATTCTTTCATC
AAAACTACAGGTAGTTCCACTACTGATCACATTAAAGTCCATATGCTTGC
TTAACAAAATCTCCGATTTCTTCATCAAAACTACAGATAGTTCCACTACT
GATCACATTAATGTCTGTAGGGCTTGCTTAGGACTTTCATTTTATCATAT
TCAATCATCTCTGACAAACGAACATCAAATAACATTCTTCTGCTTTCTTC
AATAGAGGAAAAGTAATTTACTCCACTTCAGCCAAGTAATCACGAATTTC
ATTTGGAGTCAATACTCTGAACTCTTTCTTTTCACCAATTATGCCAATCT
CAATGTTTTTTTCAGAAATCTGTCCTTCAAACCCTTCCTTTAGTGTCAAT
ATTGCCGTGTGGACAGCATCATCGAGCTCCATTTCCTCTACATACCTCTT
CTCAAGAAATGTCTTTGCATTGGAGACATTTTTCCCCATTGCTGAAGCTT
T
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