CB304664

Overview
NameCB304664
Unique NameCB304664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304664_ssr66 microsatellite CB304664_ssr66:66..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2568 contig Csv1_Contig2568:324..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304664 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.932e-42
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = -1
Query:  293 APVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKIRAH 547
            APVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK+RAH
Sbjct:   13 APVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CB304664 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.032e-19
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = -1
Query:  296 APVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKIRA 547
            A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH++R+
Sbjct:   13 ASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CB304664 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.541e-18
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = -1
Query:  296 APVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKIRA 547
            A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH++R+
Sbjct:   13 ASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CB304664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.932e-4298.82Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.032e-1954.35Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.541e-1852.17Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_B06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_B06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304664 ID=CB304664; Name=CB304664; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTACAGTCTGGGATCCCAG
ACCGCATAACCCCTCTATATATATATAAAAGTAATTTTGCAATACAGGAA
TTCTTTACTTTTATTGACAAGTTAATAGACAAAATCATGGAAATGCACTA
TTAAAAGTTGTCAATAACAGTTGATATCAATACAACAGCAAAGACTTAAG
AGTGAGTCAAATTGCTACTGTAACAACATCACTTAAAAAGTTAAAGCACC
GCTAACAGCAAAGGATCTGCTGCTATGCGCCACCACTCCCTAGTGTGCCC
TGATTTTGTGGTTCAACAGCATCTCTCGAAGCTCTGCTGGATCAATCTCG
ACCGCCCGATTCTCCGGCCTGTAGTACCCAGTGATGGGATCTGGGGCCCA
GGCAGAAGAGGCCCCAGAATCCTCTCTCACCGCAGGCCTCAAATCATTTT
TCTCCATGATACCAGTCCGAGATATGGTCCCCAAGGGTGCTGCTGCAGCA
TATCCTCTCCTGCTAATGGAGAGCGAGATGCCATCAGCAACAGGAGC
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