CB304766

Overview
NameCB304766
Unique NameCB304766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig355 contig Csv1_Contig355:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.895e-47
Identity = 93/126 (73.81%), Postives = 102/126 (80.95%), Query Frame = -2
Query:  293 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTD-YPKVPCRIINSGELPLD 667
            KGYGY+G  FHRII +FMIQ           G+SIYGS FEDESF LKHVGPGVLSMANAGPNTNGSQFFICTV TPWLDNRHVVFGHVI+G+DVV++LES ETS+ D  PK PC+I  SGELPLD
Sbjct:  122 KGYGYQGSFFHRIIPNFMIQGGDFTEGNGTGGVSIYGSKFEDESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGELPLD 247          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.761e-45
Identity = 90/126 (71.43%), Postives = 96/126 (76.19%), Query Frame = -2
Query:  290 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLDA 667
            K YGYKG SFHRIIKDFMIQ           GISIYG+ FEDE+F LKH GPG+LSMANAGPNTNGSQFFICTVKT WLDN+HVVFG VI+GM +VR LES ET   D PK  CRI   GELPLDA
Sbjct:  135 KKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVPKKGCRIYACGELPLDA 260          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.872e-41
Identity = 84/124 (67.74%), Postives = 95/124 (76.61%), Query Frame = -2
Query:  293 GYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 664
            GYGY+G SFHRIIK+FMIQ           G SIYGS F DE+F LKH GPGVLSMANAG +TNGSQFFICTVKT WLDNRHVVFGHV++GMDVV  +E+V+TSR D P  P  I  SGELP++
Sbjct:   92 GYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGELPIE 215          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.099e-39
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = -2
Query:  296 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 667
            KG+GYKG +FHR+I+DFMIQ           G S+YG +F+DE+F L HVGPGVLSMANAGPNTNGSQFFICT+KT WLD RHVVFG VI+GM+VV+ +E  ET R D P+    I + G+LP+
Sbjct:  133 KGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQLPM 256          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.420e-35
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = -2
Query:  365 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 667
            KG+GYKG +FHR+I  FM Q           G SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   86 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 186          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.467e-35
Identity = 74/124 (59.68%), Postives = 85/124 (68.55%), Query Frame = -2
Query:  296 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPL 667
            KGYGYK   FHR+IKDFMIQ           G SIYG  F DE+F L+H GPG+LSMANAG +TNGSQFFI TV T WLD RHVVFG VI+GMDVV  +E+ +T   D P  P  I + GELP+
Sbjct:   70 KGYGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGELPV 193          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.834e-35
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = -2
Query:  365 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 667
            KG+GYKG +FHR+I  FM Q           G SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   85 KGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 185          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.834e-35
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = -2
Query:  365 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 667
            KG+GYKG +FHR+I  FM Q           G SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   85 KGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 185          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.697e-34
Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = -2
Query:  293 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLESVETSRTDYPKVPCRIINSGELPLD 667
            KG+GYK   FHR+IKDFMIQ           G SIYG  F DE+F LKH GPG +SMANAG +TNGSQFFI TVKT WLD +HVVFG V++GMDVVRK+ES +T   D P     I++SG++ ++
Sbjct:   84 KGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKIEVE 208          
BLAST of CB304766 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.895e-34
Identity = 69/101 (68.32%), Postives = 78/101 (77.23%), Query Frame = -2
Query:  365 KGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRKLES 667
            KG+GYKG +FHR+I  FM Q           G SIYGS F DE+F LKH GPGVLSMANAGPNTNGSQFFICT+KT WLD +HVVFGHV +GMDVV+K+ES
Sbjct:   87 KGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIES 187          
The following BLAST results are available for this feature:
BLAST of CB304766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
CYPB_VICFA3.895e-4773.81Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
CP20C_ARATH4.761e-4571.43Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPIB_CRYNE1.872e-4167.74Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CP20B_ARATH5.099e-3961.29Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIF_HUMAN3.420e-3569.31Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_ORPSP4.467e-3559.68Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIF_RAT5.834e-3569.31Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE5.834e-3569.31Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_MOUSE1.697e-3457.60Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIF_BOVIN2.895e-3468.32Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304766 ID=CB304766; Name=CB304766; organism=Citrus sinensis; type=EST; length=668bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAAATTAGCGCTCTGTTG
TATTATTGACTGTTTACTACAAGTGGAATCTGCACATATACATTCAACCG
AACAATAGTACACATTCAGCTCTACCATGAGCTTACCGAGTATTATTCTT
GAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTTTCATGTAGATAAC
AGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAATTACAAAAGTCGT
ATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGATCAGGCATCTAATG
GTAGTTCTCCACTATTGATAATTCTACATGGCACCTTTGGGTAATCTGTC
CTGCTTGTCTCTACAGATTCAAGTTTCCTCACGACGTCCATTCCATCAAT
GACATGTCCAAACACAACATGGCGGTTGTCCAACCATGGTGTCTTCACTG
TGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACCTGCATTGGCCATG
CTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGCTCTCATCTTCAAA
GCTGGAACCATAAATACTGATGCCTCCAGTTCCATCTCCCTCAGTGAAGT
CCCCTCCCTGGATCATAAAATCTTTAATAATACGGTGGAAGGAGCATCCT
TTGTAACCATATCCTTTC
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