CB304835
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH57_ARATH (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.917e-43 Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = -2 Query: 357 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPK 650 ATDVIARGMDFKG+NCVINYDFPDS +AYIHRIGR+GRAGRSGEAIT YTE D+PFLRNIAN M +SGCEVPSWI++L K K +KHRPRR+SISTKPK Sbjct: 436 ATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPK 533
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39 Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = -2 Query: 354 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKD 650 AT+VIARGMDFKGVNCVINYDFP+S +AYIHRIGR+GRAGRSGEAIT +TE+D PFLRNIAN++ +SGCEVPSWI LPKLK KKHR R+ IST P + Sbjct: 441 ATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNIANVLISSGCEVPSWIKALPKLKRKKHRVNRDPISTLPDE 539
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 2.780e-26 Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRP------RRESISTKPK 647 T ++ARG+DFKGVN VINYDFP S YIHRIGRTGRAG G+AIT +TEDD P LR++AN+++ +GC VP +I KL K+ + RESIST PK Sbjct: 469 TALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPK 571
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.631e-26 Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRP------RRESISTKPK 647 T ++ARG+DFKGVN VINYDFP S YIHRIGRTGRAG G+A+T +TEDD P LR++AN+++ +GC VP +I KL K+ + RESIST PK Sbjct: 467 TALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPK 569
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_RAT (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus GN=Ddx52 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.743e-26 Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRP------RRESISTKPK 647 T ++ARG+DFKGVN VINYDFP S YIHRIGRTGRAG G+A+T +TEDD P LR++AN+++ +GC VP +I KL K+ + RESIST PK Sbjct: 470 TALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPK 572
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_SCHPO (ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe GN=rok1 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26 Identity = 54/102 (52.94%), Postives = 78/102 (76.47%), Query Frame = -2 Query: 363 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLP------KLKGKKHRPRRESISTK 650 ATD++ARG+DF GV VIN+DFP S +YIHRIGRTGRAG +G+A+T +T++D +++ IA +M++SGCEVP+W++ LP K K KK P+R+ I+T+ Sbjct: 344 ATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMALPKPSKEMKKKLKKSPPKRKRITTR 445
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_MOUSE (Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus GN=Ddx52 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26 Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = -2 Query: 309 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKDGEE*SCKSPSFFLKE 647 T ++ARG+DFKGVN VINYDFP S YIHRIGRTGRAG G+A+T +TEDD P LR++AN+++ +GC VP +I KL K +++ + KP + E C +P +FL++ Sbjct: 470 TALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSK----QKKKMIKKPLERES-ICTTPKYFLEQ 577
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_CANGA (ATP-dependent RNA helicase ROK1 OS=Candida glabrata GN=ROK1 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25 Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647 TDV+ARG+DFKGVN VINYD P + AY+HRIGRTGR GRSG+A+TLYT+ D ++ I N+MK SGCEV W+ + K+ KGK H+ R+ IST PK Sbjct: 431 TDVLARGIDFKGVNLVINYDVPTTAQAYVHRIGRTGRGGRSGKAVTLYTKLDSVAIKPIINVMKQSGCEVEGWMNNISKITKREKEAIKKGKSHK-ERDQISTVPK 535
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_YEAST (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae GN=ROK1 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25 Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647 TDV+ARG+DFKGVN VINYD P S AY+HRIGRTGR GRSG+AIT YT+ D ++ I N+MK SGCEV W+ + K+ GK H+ R++ I+T PK Sbjct: 429 TDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAHKERKQ-ITTVPK 533
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_YEAS7 (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain YJM789) GN=ROK1 PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25 Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = -2 Query: 357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647 TDV+ARG+DFKGVN VINYD P S AY+HRIGRTGR GRSG+AIT YT+ D ++ I N+MK SGCEV W+ + K+ GK H+ R++ I+T PK Sbjct: 429 TDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAHKERKQ-ITTVPK 533 The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 351
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bpback to top |