CB304864

Overview
NameCB304864
Unique NameCB304864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length405
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304864_ssr382 microsatellite CB304864_ssr382:382..396. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2579 contig Csv1_Contig2579:407..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304864 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.293e-20
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = -1
Query:  151 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKVRP 318
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CK  P
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGP 54          

HSP 2 Score: 36.1946 bits (82), Expect = 4.293e-20
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = -2
Query:  120 KCGPTCACVNCTCG 161
            KCGP+C+C NCTCG
Sbjct:   51 KCGPSCSCTNCTCG 64          
BLAST of CB304864 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-15
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = -1
Query:  160 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCK 309
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CK
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCK 51          

HSP 2 Score: 30.0314 bits (66), Expect = 7.618e-15
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  117 KCGPTCACVNCTCGS 161
            KCG  CAC +C CG+
Sbjct:   51 KCGAACACTDCKCGN 65          
BLAST of CB304864 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.903e-15
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = -1
Query:  160 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCK 318
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CK
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCK 50          

HSP 2 Score: 31.5722 bits (70), Expect = 9.903e-15
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = -2
Query:  123 KCGPTCACVNCTC 161
            KCG +C CVNCTC
Sbjct:   50 KCGTSCPCVNCTC 62          
BLAST of CB304864 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.050e-13
Identity = 30/56 (53.57%), Postives = 35/56 (62.50%), Query Frame = -1
Query:  151 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKVRP 318
            MS  C NCDC+D SQC KKG S+    VET+   + T V+MD  AAE  GNCK  P
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDT-VIMDAPAAENGGNCKCGP 55          

HSP 2 Score: 32.3426 bits (72), Expect = 5.050e-13
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = -2
Query:  123 KCGPTCACVNCTC 161
            KCGP+CACV+C C
Sbjct:   52 KCGPSCACVDCKC 64          
BLAST of CB304864 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.430e-12
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = -1
Query:  160 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCK 318
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CK
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCK 52          

HSP 2 Score: 31.5722 bits (70), Expect = 2.430e-12
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = -2
Query:  120 KCGPTCACVNCTCG 161
            KCG  C+CV+CTCG
Sbjct:   52 KCGTGCSCVSCTCG 65          
BLAST of CB304864 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.992e-12
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = -1
Query:  160 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCK 318
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CK
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCK 48          

HSP 2 Score: 28.8758 bits (63), Expect = 8.992e-12
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = -2
Query:  120 KCGPTCACVNCTCG 161
            KCG +C+C +C CG
Sbjct:   48 KCGTSCSCTDCKCG 61          
BLAST of CB304864 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.992e-12
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = -1
Query:  160 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCK 318
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CK
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCK 48          

HSP 2 Score: 28.8758 bits (63), Expect = 8.992e-12
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = -2
Query:  120 KCGPTCACVNCTCG 161
            KCG +C+C +C CG
Sbjct:   48 KCGTSCSCTDCKCG 61          
The following BLAST results are available for this feature:
BLAST of CB304864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA4.293e-2066.07Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC7.618e-1562.00Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE9.903e-1566.04Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV5.050e-1353.57Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.430e-1256.60Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ8.992e-1254.72Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI8.992e-1254.72Metallothionein-like protein 3A OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304864 ID=CB304864; Name=CB304864; organism=Citrus sinensis; type=EST; length=405bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCACCCTTACATTATTCTTA
ACCCCCACAATATTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCATG
TGTTTGCTTATTAGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGTG
GGGCCGCACTTTGCAGTTACCTTCAGTCTCAGCAGCCTGAACGTCCATGA
CAACAACGGTGCTGACAAAGCTCAAGTCAGTCTCGACGAAGTCAGCAGCA
TAGCTGCTTCCCTTCTTCACACACTGGCTCCTGTCAGCGCAGTCGCAGTT
GCCGCAGGTGTCCGACATGTTGATTGAGCTTAAAACTTAAAACTTAAAAC
TGAAAATAGAGGGCTCTTTATTGTACGAAACTTGCTTTGCTTTGCTGTGA
TGCCC
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