CB304913

Overview
NameCB304913
Unique NameCB304913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13203 contig Csv1_Contig13203:1..591. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.009e-35
Identity = 59/117 (50.43%), Postives = 91/117 (77.78%), Query Frame = -2
Query:  244 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYVHAPTAVPTLHPELGTQLILRKL 594
            +TKLG+ T+PAG Q+ LP +++H++  +WG+DA+EF P RF +G++ A KN V+Y PF+ GPR+C+GQNFAL++AK+   MILQ + F+++PSYVHAP  + T+ P+ G+ +I +KL
Sbjct:  406 DTKLGSYTIPAGTQVMLPTVMLHREKSIWGEDAMEFNPMRFVDGVANATKNNVTYLPFSWGPRVCLGQNFALLQAKLGLAMILQRFKFDVAPSYVHAPFTILTVQPQFGSHVIYKKL 522          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = -2
Query:  310 TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELSPSYV 591
            T +  + + AG  I +    +H DP++WGDD  EFKPER+  G  +    +  Y PF +GPRIC+G   A++E KM  T IL+NY+FE +P  V
Sbjct:  402 TNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESG-DELFFAKGGYLPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFETTPETV 494          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13A1_CAEEL (Putative cytochrome P450 CYP13A1 OS=Caenorhabditis elegans GN=cyp-13A1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = -2
Query:  328 TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 591
            TKLGN+ +  G  I +    +H DP +WGDDA +FKPER+    S     +  Y PF LGPR C+G   A +E K+    IL+ ++FE
Sbjct:  402 TKLGNMKVEVGTMIQVDTWTLHTDPNIWGDDAEDFKPERWQTPNSDQIYQKSGYIPFGLGPRQCIGMRLAYMEEKILLVHILRKFTFE 489          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13A2_CAEEL (Putative cytochrome P450 CYP13A2 OS=Caenorhabditis elegans GN=cyp-13A2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  328 TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 591
            T +  + + AGV + +    +H DPELWG+D  EFKPER++    +  +++ +Y PF LGPR C+G   A++E K+  T +L+NY+FE
Sbjct:  399 TTVNGVKIEAGVYVQMDTWSLHYDPELWGEDVKEFKPERWST--DEPLEHKGAYLPFGLGPRQCIGMRLAIMEQKILLTHLLKNYTFE 484          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  +T+P G  + +P+ ++H +PELW +   EF+PERF++  +K + N   Y PF  GPR C+G  FA++  K+A   ILQN+SF+
Sbjct:  380 DVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPE-EFRPERFSKN-NKDSINPYVYLPFGTGPRNCLGMRFAIMNIKLALVRILQNFSFK 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13AA_CAEEL (Putative cytochrome P450 CYP13A10 OS=Caenorhabditis elegans GN=cyp-13A10 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  325 TKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFEL 591
            TKLGN+ +  G  + +    +H D ++WGDDA EFKPER+ +        +  Y  F LGPR CVG   A +E KM    IL+ Y+FE+
Sbjct:  402 TKLGNVEVEVGTMVQVDTWSLHTDTKIWGDDAKEFKPERWLDPNCDQVFQKGGYISFGLGPRQCVGMRLAYMEEKMLLAHILRKYTFEV 490          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13A5_CAEEL (Putative cytochrome P450 CYP13A5 OS=Caenorhabditis elegans GN=cyp-13A5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  322 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELS 594
            ET +  + +  G  + +    +H DP++WG+DA EF+PER+  G  +    +  Y PF +GPRIC+G   A++E KM  T IL+ Y+FE S
Sbjct:  401 ETNVLGVQIEKGTNVQVDTWTLHYDPKVWGEDANEFRPERWESG-DELFYAKGGYLPFGMGPRICIGMRLAMMEKKMLLTHILKKYTFETS 490          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AO_SHEEP (Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 33/89 (37.08%), Postives = 59/89 (66.29%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  +++P G  + +P+ ++H+DP+LW +   EF+PERF++  +K + N   Y PF  GPR C+G  FA++  K+A   +LQN+SF+
Sbjct:  380 DVEIHGVSIPKGTAVTVPIFVLHRDPQLWPEPE-EFRPERFSKK-NKDSINPYVYLPFGTGPRNCIGMRFAIMNMKLAIVRVLQNFSFK 466          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: C13A4_CAEEL (Putative cytochrome P450 CYP13A4 OS=Caenorhabditis elegans GN=cyp-13A4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  322 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFELS 594
            +T +  + +  G  + +    +H DP++WGDDA EFKPER+  G  +    +  Y PF +GPRIC+G   A++E K+  T IL+ Y+F+ S
Sbjct:  401 KTNVLGVEIDEGTNVQVDTWTLHYDPKVWGDDASEFKPERWETG-DELFYAKGGYLPFGMGPRICIGMRLAMMEEKLLLTHILKKYTFDTS 490          
BLAST of CB304913 vs. ExPASy Swiss-Prot
Match: CP3AT_PIG (Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 34/89 (38.20%), Postives = 57/89 (64.04%), Query Frame = -2
Query:  328 ETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFALVEAKMATTMILQNYSFE 594
            + ++  + +P G  + +P+ ++H+DP+LW +   EF+PERF++   K   N  +Y PF  GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  380 DVEIHGVFVPKGTVVVVPVFVLHRDPDLWPEPE-EFRPERFSKK-HKDTINPYTYLPFGTGPRNCIGMRFALMNMKLALVRVLQNFSFK 466          
The following BLAST results are available for this feature:
BLAST of CB304913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
C72A1_CATRO8.009e-3550.43Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
C13A7_CAEEL4.881e-1642.55Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]
C13A1_CAEEL7.049e-1542.05Putative cytochrome P450 CYP13A1 OS=Caenorhabditis... [more]
C13A2_CAEEL9.206e-1540.91Putative cytochrome P450 CYP13A2 OS=Caenorhabditis... [more]
CP3AS_BOVIN5.967e-1439.33Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
C13AA_CAEEL5.967e-1441.57Putative cytochrome P450 CYP13A10 OS=Caenorhabditi... [more]
C13A5_CAEEL5.967e-1439.56Putative cytochrome P450 CYP13A5 OS=Caenorhabditis... [more]
CP3AO_SHEEP7.793e-1437.08Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2... [more]
C13A4_CAEEL1.329e-1338.46Putative cytochrome P450 CYP13A4 OS=Caenorhabditis... [more]
CP3AT_PIG2.267e-1338.20Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_H12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_H12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304913 ID=CB304913; Name=CB304913; organism=Citrus sinensis; type=EST; length=595bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATAATATTTAATTTCAA
TTAATCACAAAAAAATAATACAGTGTAGCACCAAATATTGTACAATATTA
TTATAATACAGTACTAATGCAATACAGTATAATACAATACAATGGGCCAA
ACGCACCCTAAATACATTAAACTTCATTATAAAAAAGTCTACATTGGCAT
CATGCTCATCTTATAGTTGCCGGTATTAATTATTTTTGCACCATAGTTTC
CGTAAAATCAATTGGGTACCCAGTTCCGGATGAAGGGTTGGAACCGCCGT
TGGAGCATGGACATAGGATGGAGACAACTCGAATGAGTAGTTTTGAAGAA
TCATTGTCGTGGCCATTTTTGCTTCTACTAAAGCAAAATTTTGTCCAACA
CATATCCTAGGACCCAATGCGAATGGGAAATATGAAACTTGATTTTTCGC
CGCCTTTGAAATTCCTTCCGCAAACCTTTCCGGCTTAAACTCAACTGCAT
CGTCACCCCAAAGTTCAGGATCCTGGTGAACTAGGATCATTGGCAAGCCA
ATTTGAACCCCAGCGGGTAATGTCAAGTTTCCGAGTTTCGTTTCC
back to top