CB304930

Overview
NameCB304930
Unique NameCB304930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304930_ssr34 microsatellite CB304930_ssr34:34..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1001 contig Csv1_Contig1001:978..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.958e-36
Identity = 72/85 (84.71%), Postives = 78/85 (91.76%), Query Frame = -3
Query:  389 MQRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 643
            MQRPGTPLYNIKAYLPV+ESFGFS  LRA+TSGQAFPQCVFDHW+MM SDPLE G+QA+ LV+ IRK KGLKEQMTPLSEFEDKL
Sbjct:  759 MQRPGTPLYNIKAYLPVVESFGFSSTLRASTSGQAFPQCVFDHWEMMPSDPLEAGSQASTLVSVIRKRKGLKEQMTPLSEFEDKL 843          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = -3
Query:  389 MQRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 643
            +QRPGTP++N+KAYLPVIESFGF+  LRAAT+GQAFPQCVFDHW+ M SDP + G+QA  LV DIRK KGLK +   LSE+EDKL
Sbjct:  761 LQRPGTPIFNLKAYLPVIESFGFTSTLRAATAGQAFPQCVFDHWEAMGSDPTQVGSQANTLVMDIRKRKGLKPEPAALSEYEDKL 845          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QR GTPLYNIKAYLPV ESFGF+G LR AT+GQAFPQ VFDHW  MS DPL+P ++  Q+V + RK KGLKE +   +E+ D+L
Sbjct:  759 QRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENVPDYTEYYDRL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_ASHGO (Elongation factor 2 OS=Ashbya gossypii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW  + +DPL+P T+A ++V + RK  GLKE +    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGTDPLDPTTKAGEIVVEARKRHGLKENVPGWQEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_KLULA (Elongation factor 2 OS=Kluyveromyces lactis GN=EFT1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.699e-24
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLP+ ESFGF+G LR AT GQAFPQ VFDHW  + +DPL+P T+A ++V   RK +G+KE++    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPINESFGFTGELRQATGGQAFPQMVFDHWATLGTDPLDPSTKAGEIVLAARKRQGMKEEVPGWQEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_YEAST (Elongation factor 2 OS=Saccharomyces cerevisiae GN=EFT1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.654e-23
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW  + SDPL+P ++A ++V   RK  G+KE++    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_SACKL (Elongation factor 2 OS=Saccharomyces kluyveri GN=EFT2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.654e-23
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW  + +DPL+P T+A ++V   RK  G+KE++    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGTDPLDPTTKAGEIVTAARKRHGMKEEVPGWQEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_CANGA (Elongation factor 2 OS=Candida glabrata GN=EFT1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.654e-23
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW  ++SDPL+P ++A ++V   RK  G+KE++    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLNSDPLDPTSKAGEIVTAARKRHGMKEEVPGWQEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_SACCA (Elongation factor 2 OS=Saccharomyces castellii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.287e-23
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+ +KAYLPV ESFGF+G LR AT GQAFPQ VFDHW  + SDPL+P ++A ++V   RK  G+KE +    E+ DKL
Sbjct:  759 QRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWATLGSDPLDPTSKAGEIVTAARKRHGMKEVVPGWQEYYDKL 842          
BLAST of CB304930 vs. ExPASy Swiss-Prot
Match: EF2_ENTHI (Elongation factor 2 OS=Entamoeba histolytica GN=EF-2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.211e-23
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = -3
Query:  389 QRPGTPLYNIKAYLPVIESFGFSGPLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKWKGLKEQMTPLSEFEDKL 640
            QRPGTPL+N++AYLPV ESFGF+  LR+ TSGQAFPQCVFDHW +++ D  +  ++   +VA IRK KGL E +  L +F DKL
Sbjct:  757 QRPGTPLFNVRAYLPVCESFGFTADLRSHTSGQAFPQCVFDHWQLLNGDVTDATSKVGSIVAAIRKRKGLPEGVPGLDKFYDKL 840          
The following BLAST results are available for this feature:
BLAST of CB304930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF2_BETVU4.958e-3684.71Elongation factor 2 OS=Beta vulgaris PE=2 SV=1[more]
EF2_CHLKE1.183e-2970.59Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]
EF2_SCHPO3.938e-2564.29Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_ASHGO5.686e-2460.71Elongation factor 2 OS=Ashbya gossypii GN=EFT1 PE=... [more]
EF2_KLULA9.699e-2458.33Elongation factor 2 OS=Kluyveromyces lactis GN=EFT... [more]
EF2_YEAST1.654e-2359.52Elongation factor 2 OS=Saccharomyces cerevisiae GN... [more]
EF2_SACKL1.654e-2359.52Elongation factor 2 OS=Saccharomyces kluyveri GN=E... [more]
EF2_CANGA1.654e-2359.52Elongation factor 2 OS=Candida glabrata GN=EFT1 PE... [more]
EF2_SACCA6.287e-2359.52Elongation factor 2 OS=Saccharomyces castellii GN=... [more]
EF2_ENTHI8.211e-2358.33Elongation factor 2 OS=Entamoeba histolytica GN=EF... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304930 ID=CB304930; Name=CB304930; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCATAATAATAATAATAAT
ATATCAACCAACGTCGGCCAGAATTAGTTTAAACACATGACAGAACATCA
AACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGACAGAGACA
GGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACACAATGAG
GATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAATATTGCT
GCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTCGTCCTCT
ACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGCAACAAGC
TGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCTTGTCCTC
AAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCACTTCCTGA
TATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCCAGTGGATCGGAT
GACATCATGTCCCAGTGATCAAACACACATTGTGGGAAGGCCTGTCCTGA
CGTTGCAGCCCTCAAAGGGCCTGAGAATCCAAAGGACTCGATGACGGGAA
GGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTCTGCATTT
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