CB304989

Overview
NameCB304989
Unique NameCB304989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304989_ssr60 microsatellite CB304989_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB304989 vs. ExPASy Swiss-Prot
Match: SDR2_ARATH (Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.213e-47
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = -2
Query:  354 THFS*ILQEYVXNAGIGGFNMEGDNF-VGIVEGGLPDNWYKMLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 662
            THF   L   + NAG+GG   + D    G  + G    W + +T+TYELAE+CI+ NYYG KRMCEA IPLLQLSDSPRI+N SS MG++KN+ NEWAKG+LSD
Sbjct:   83 THFG-KLDILINNAGVGGVITDVDALRAGTGKEGF--KWEETITETYELAEECIKINYYGPKRMCEAFIPLLQLSDSPRIINVSSFMGQVKNLVNEWAKGILSD 183          

HSP 2 Score: 92.8189 bits (229), Expect = 5.213e-47
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = -1
Query:   91 LDEVPKEYLNDFTPETQD--------AAYVISKAATNAYTRILAKKFTKICINSICPGYVKTDLNHNNGVLTVEEGAESLVWLVLLP-KGGPSKCVF 354
            +D+V  + LND   +T          +AYV+SKA  NAYTRILAKK  +I +NS+CPG+VKTD+N   G+L+VEEGA S V L LLP +  PS C F
Sbjct:  192 IDQVINQLLNDLKEDTAKTKYWAKVMSAYVVSKAGLNAYTRILAKKHPEIRVNSVCPGFVKTDMNFKTGILSVEEGASSPVRLALLPHQESPSGCFF 288          
BLAST of CB304989 vs. ExPASy Swiss-Prot
Match: SDR1_ARATH ((+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.655e-46
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = -2
Query:  354 VXNAGIGGFNMEGDNF-VGIVEGGLPDNWYKMLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 632
            V NAGIGG   + +    G  + G    W +++T+TYEL E+CI+ NYYG KRMCEA IPLL+LSDSPRIVN SSSMG+LKN+ NEWAKG+LSD
Sbjct:   92 VNNAGIGGIITDAEALRAGAGKEGF--KWDEIITETYELTEECIKINYYGPKRMCEAFIPLLKLSDSPRIVNVSSSMGQLKNVLNEWAKGILSD 183          

HSP 2 Score: 88.9669 bits (219), Expect = 5.655e-46
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = -1
Query:   91 E*LDEVPKEYLNDFTPETQD--------AAYVISKAATNAYTRILAKKFTKICINSICPGYVKTDLNHNNGVLTVEEGAESLVWLVLLP-KGGPSKCVF 360
            E +D+V  + LNDF   T          +AYV+SKA+ N YTR+LAKK  +  +N++CPG+VKTD+N   GVL+VEEGA S V L LLP +  PS C F
Sbjct:  190 ERIDQVINQLLNDFKEGTVKEKNWAKFMSAYVVSKASLNGYTRVLAKKHPEFRVNAVCPGFVKTDMNFKTGVLSVEEGASSPVRLALLPHQETPSGCFF 288          
BLAST of CB304989 vs. ExPASy Swiss-Prot
Match: MNR1_CAPAN ((+)-neomenthol dehydrogenase OS=Capsicum annuum GN=MNR1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.440e-41
Identity = 55/109 (50.46%), Postives = 66/109 (60.55%), Query Frame = -2
Query:  354 VXNAGIGGFNMEGD---------NFVGIV----EGGLPDNWYKM---LTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 632
            + NAGI G  +EGD          ++ IV    E G    W K        YEL ++CI+TNYYG KRM EA IPLLQLS+SPRIVN +SSMGKLK + N+WA  VL D
Sbjct:   94 INNAGISGVMVEGDVQVLKEILERYISIVFTEDENGEEGGWTKSGPGSVTNYELTKECIETNYYGAKRMTEAFIPLLQLSNSPRIVNVASSMGKLKLLCNKWAIEVLRD 202          

HSP 2 Score: 93.2041 bits (230), Expect = 8.440e-41
Identity = 50/98 (51.02%), Postives = 63/98 (64.29%), Query Frame = -1
Query:   91 E*LDEVPKEYLNDFTPETQDA--------AYVISKAATNAYTRILAKKFTKICINSICPGYVKTDLNHNNGVLTVEEGAESLVWLVLLPKGGPSKCVF 360
            E +D+V  E+L DFT ++ ++        AY +SKA+  AYTR+LA K+    INS+CPGY KTD+N N G LT  EGAESLV L LLP  GPS   F
Sbjct:  209 EKVDQVVNEFLKDFTEKSTESKGWPSYFTAYKVSKASLIAYTRVLATKYPNFRINSVCPGYCKTDVNANTGSLTAGEGAESLVNLALLPNDGPSGLFF 306          
BLAST of CB304989 vs. ExPASy Swiss-Prot
Match: SALR_PAPBR (Salutaridine reductase OS=Papaver bracteatum GN=SALR PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.752e-34
Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = -2
Query:  354 VXNAGIGGFNMEGDNFVGIVEGGLPDNW-----------YKMLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 632
            V NAG+ GF+++ D F  ++     D+             +++++TYELAE+C++ NYYG K + E L+PLLQLSDSPRIVN SSS G LK ++NE A  +L D
Sbjct:   96 VNNAGVAGFSVDADRFKAMISDIGEDSEEVVKIYEKPEAQELMSETYELAEECLKINYYGVKSVTEVLLPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGD 199          

HSP 2 Score: 75.485 bits (184), Expect = 1.752e-34
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = -1
Query:  103 AAYVISKAATNAYTRILAKKFTKICINSICPGYVKTDLNHNNGVLTVEEGAESLVWLVLLPKGGPS 300
            AAY  SKA  NAYTR+LAKK  K  +N +CPG VKT++N+  G  T +EGA+ +V + L P  GPS
Sbjct:  234 AAYTTSKACLNAYTRVLAKKIPKFQVNCVCPGLVKTEMNYGIGNYTADEGAKHVVRIALFPDDGPS 299          
BLAST of CB304989 vs. ExPASy Swiss-Prot
Match: CBR3_HUMAN (Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CBR3 PE=1 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 5.990e-11
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  118 LDEVPKEYLNDFTPETQD------AAYVISKAATNAYTRILAK------KFTKICINSICPGYVKTDLNHNNGVLTVEEGAESLVWLVLLP 354
            L ++ K+++ D   E  +      + Y +SK      +RILA+      K  +I +N+ CPG VKTD++  + + TVEEGAE+ V+L LLP
Sbjct:  168 LVDLMKKFVEDTKNEVHEREGWPNSPYGVSKLGVTVLSRILARRLDEKRKADRILVNACCPGPVKTDMDGKDSIRTVEEGAETPVYLALLP 258          

HSP 2 Score: 30.8018 bits (68), Expect = 5.990e-11
Identity = 13/36 (36.11%), Postives = 23/36 (63.89%), Query Frame = -2
Query:  411 AEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASS 518
            AE  ++TN++  + MC  L+P+++     R+VN SS
Sbjct:  107 AEMTLKTNFFATRNMCNELLPIMK--PHGRVVNISS 140          
The following BLAST results are available for this feature:
BLAST of CB304989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SDR2_ARATH5.213e-4757.69Short-chain dehydrogenase/reductase 2 OS=Arabidops... [more]
SDR1_ARATH5.655e-4661.70(+)-neomenthol dehydrogenase OS=Arabidopsis thalia... [more]
MNR1_CAPAN8.440e-4150.46(+)-neomenthol dehydrogenase OS=Capsicum annuum GN... [more]
SALR_PAPBR1.752e-3445.19Salutaridine reductase OS=Papaver bracteatum GN=SA... [more]
CBR3_HUMAN5.990e-1136.26Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CB... [more]
back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304989 ID=CB304989; Name=CB304989; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACAGCAAATCAAAATCATT
TTCATAAATAGAGAGAGAGAGATGTGTCGTTTTCAATCAAGAATACACAT
TTTGAAGGACCTCCTTTGGGCAGCAGAACTAACCACACTAGACTTTCAGC
ACCTTCTTCAACGGTTAATACGCCGTTGTTGTGGTTTAAATCTGTTTTGA
CATAGCCAGGGCAAATACTATTGATGCAAATTTTTGTGAATTTTTTCGCC
AGGATCCTTGTGTAGGCATTAGTTGCTGCTTTTGATATTACGTAAGCGGC
GTCTTGGGTTTCAGGTGTAAAATCATTTAGATACTCCTTCGGCACCTCAT
CCAATCACTCAACACTCCTTTGGCCCATTCATTTGTTATATTCTTTAACT
TTCCCATGGAAGAGGAAGCATTAACAATTCTGGGTGAATCTGATAACTGG
AGGAGGGGAATAAGTGCTTCACACATTCTTTTGTTACCATAGTAGTTTGT
TTGAATGCACTTTTCAGCTAACTCATAAGTTTGAGTTAACATTTTATACC
AGTTGTCCGGCAAACCACCCTCAACAATTCCTACAAAATTATCACCTTCC
ATGTTGAATCCACCAATCCCTGCATTGNTTACATATTCTTGTAGAATTCA
GGAGAAATGCGTTCCGGANNNCCCTAAT
back to top