CB305040

Overview
NameCB305040
Unique NameCB305040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305040_ssr570 microsatellite CB305040_ssr570:570..584. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:120..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.982e-21
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = -1
Query:  309 MLDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTCG 506
            M DTCGN DCAD++QCVKKGSSY AD +ET+ S ++  VVMD  A E +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.559e-17
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = -1
Query:  306 LDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTCGS 503
            + TCGN DC D+SQCVKKG+SY  D VET+ S+V  V+V   +A E +G CKCG  CAC +C CG+
Sbjct:    1 MSTCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = -1
Query:  312 MLDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTC 506
            M D CGN DCAD SQCVKKG+S   D VETD S++  VV M V A E+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = -1
Query:  312 MLDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTC 506
            M   C N DC+D SQC KKG S+    VET+   + TV+ MD  A E  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.704e-14
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = -1
Query:  309 MLDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTCG 506
            M   C N DCAD +QCVKKG+SY    VET+   + TV V D  A E +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = -1
Query:  309 MLDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTCG 506
            M D CGN DCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.241e-13
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = -1
Query:  309 MLDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTCG 506
            M D CGN DCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.098e-11
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = -1
Query:  309 MLDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTCG 506
            M D CGN DCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CB305040 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = -1
Query:  309 MLDTCGNWDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAVEAEGNCKCGPTCACVNCTCG 506
            M D CG+ DCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CB305040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA4.982e-2165.15Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.559e-1756.06Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.829e-1663.08Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV7.704e-1453.85Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO7.704e-1454.55Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.241e-1351.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.241e-1351.52Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.098e-1146.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI7.972e-1145.45Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305040 ID=CB305040; Name=CB305040; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTAACAATAATACATTAAA
ATTAAACCACACAAGGCCACGGTCATGGCCATGGCCATATATTACATGAT
TATGAAAAAGGAAACACAAAACATTACGAGTGATGGGTGACACAACACGC
ACATCACTCCACACACTAAAAGTAAACCATCATAAAAACGAAGTAAAGAA
TTTTTCTTTTTTTTTTTAATCACCCTTACATTATTCTTAACCCCCACAAT
ATTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTAT
TAGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTT
GCAGTTACCTTCAGCCTCAACAGCCTGAACGTCCATGACAACAACGGTGC
TGACAAAGCTCAAGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCC
TTCTTCACACACTGGCTCCTGTCAGCGCAGTCCCAGTTGCCGCAGGTGTC
CAACATGTTGATTGAGCTTATAACTTAAAACTTAAAACTGGAAATAGAGG
GCTCTTTATTGTACGAAACTTGCTTTGCTTTGCTGTGATGCCC
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