CB305061

Overview
NameCB305061
Unique NameCB305061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 6.949e-25
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = -1
Query:   29 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 262
            +GVCYGMLG+NLP    V+ LY   NIRRMRLYDPN+ AL+ALRG NIEVMLG+PN  LQ IA+N + AN WVQ NV+
Sbjct:   33 VGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVR 110          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13H_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = -1
Query:   29 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 268
            AQ GVCYG  G+ LPS  DV++L N+NNIRRMR+YDP++  LEALRG NIE+MLG+PN  L+ +A++QA A+TWVQNNV+
Sbjct:   24 AQAGVCYGRQGNGLPSPADVVSLCNRNNIRRMRIYDPDQPTLEALRGSNIELMLGVPNPDLENVAASQANADTWVQNNVR 103          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = -1
Query:   29 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 268
            A IGVC GM+GD+LP + +V+ALY  NNI RMRLYDPN  ALEALRG NI+++LG+PN+ LQ IA +QA AN WVQNNV+
Sbjct:   38 APIGVCNGMVGDDLPPQAEVVALYKTNNIPRMRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNVR 117          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = -1
Query:   29 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 268
            AQ GVCYG LG+NLP+  +V+ALYNQ NIRRMR+Y P+ E LEALRG NIE++L +PND L+ +AS+Q  AN WVQ+N++
Sbjct:   32 AQSGVCYGRLGNNLPTPQEVVALYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIK 111          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.310e-23
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = -1
Query:   32 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNV 268
            AQIG+CYGM+G+NLP   +VIALY  NNI+RMRLYDPN+ AL ALR   IE++LG+PN  LQ +A+NQ  A  WVQ NV
Sbjct:   32 AQIGICYGMMGNNLPPANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNV 110          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = -1
Query:   29 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 268
            AQIGVCYGM+G+NLPS  +VI LY   NIRR+RLYDPN  AL ALRG NIEV+LGLPN  ++ I+S    A  WVQ NV+
Sbjct:   25 AQIGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVR 104          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = -1
Query:   32 QIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNV 265
            QIGVCYGM+G+NLPS  +VI LY  NNIRRMRLYDPN+ AL+ALR   IE++LG+PN  LQ +A+N   A  WVQ NV
Sbjct:    1 QIGVCYGMMGNNLPSANEVINLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNV 78          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.449e-22
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = -1
Query:   29 QIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 265
            QIGVCYGMLGD LPS  DV+ALY Q NI+RMRLY P+  AL ALRG +IE++L +P+  L+ +AS+Q EA+ WVQ NVQ
Sbjct:   31 QIGVCYGMLGDTLPSPSDVVALYKQQNIQRMRLYGPDPGALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQ 109          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.471e-22
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = -1
Query:   29 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 268
            AQ+GVCYGM G+NLP   +VIALY ++NI RMR+YDPNR  LEALRG NIE++LG+PN  LQ + +N + A +WVQ NV+
Sbjct:   36 AQVGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNRAVLEALRGSNIELILGVPNSDLQSL-TNPSNAKSWVQKNVR 114          
BLAST of CB305061 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.471e-22
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = -1
Query:   29 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNREALEALRGPNIEVMLGLPNDKLQPIASNQAEANTWVQNNVQ 268
            AQ+GVCYGM+G+NLPS  +VI LY   NI R+RLYDPN+ AL ALRG NIEV+LGLPN  ++ IAS    A  WVQ NV+
Sbjct:   25 AQLGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNQGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVK 104          
The following BLAST results are available for this feature:
BLAST of CB305061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GUB_NICPL6.949e-2566.67Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E13H_TOBAC1.185e-2463.75Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13B_PRUPE1.185e-2466.25Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13A_SOYBN4.504e-2462.50Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E13B_PEA1.310e-2363.29Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
E13B_SOLLC6.504e-2363.75Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E13B_PHAVU6.504e-2364.10Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13A_ARATH1.449e-2263.29Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13B_HEVBR2.471e-2261.25Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E132_SOLTU2.471e-2262.50Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305061 ID=CB305061; Name=CB305061; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACGTTGTTTTGGACCCAA
GTGTTCGCTTCGGCTTGATTGGAAGCGATTGGCTGGAGCTTATCGTTGGG
AAGGCCTAGCATGACTTCAATGTTGGGGCCACGAAGAGCTTCTAGAGCTT
CTCTGTTTGGATCATAGAGTCTCATTCTTCTGATGTTGTTTTGGTTGTAG
AGAGCTATGACATCTGGTTTTGATGGTAAGTTGTCACCAAGCATTCCATA
ACAAACACCTATCTGAGCAGTTGTAGTGTCTAGAGTAGCCACTAGCAGGC
CAAGAAGTAGCAAGACGACGGAAACCATTGGAGGGGTATTGAGGGAGGAT
AAGAATTTAGCCAGGGAGAAAAATGCAAATGGAAAAGTCCC
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