CB305076

Overview
NameCB305076
Unique NameCB305076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:634..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB305076 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.858e-17
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = -2 
Query:  273 QLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 455
            Q   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  182 QWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241
[Close]
BLAST of CB305076 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.083e-14
Identity = 41/64 (64.06%), Postives = 43/64 (67.19%), Query Frame = -2 
Query:  273 QLNPSAEDCGYGLK-PAQPQGDTFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 455
            QLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  184 QLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247
The following BLAST results are available for this feature:
BLAST of CB305076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AGL9_PETHY8.858e-1767.21Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA1.083e-1464.06MADS-box transcription factor 1 OS=Pisum sativum G... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305076 ID=CB305076; Name=CB305076; organism=Citrus sinensis; type=EST; length=456bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAACAAGGCTTTGTTAAATA
AAGATAAGCGCGGTGATTGAAAATACACGCACACACAACATAGCTATATA
TCGTCATCAGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATA
AATCCTTATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAG
GGATACAAAGTTGCTGATTCTTATGGATCAACTGCAATACATTGACTGGT
AATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTC
AGACTCGGGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCC
AATTTGCAATGTGGGTTCACATTCCAAGGCGTGAAAGAAGGTATCGCCCT
GAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTC
AATTGA
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