CB322132
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: BRR2_SCHPO (Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe GN=brr2 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 3.197e-46 Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTELSP D++QMLGRAGRPQ+D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD LNAE+ LGT Sbjct: 846 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGT 948
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: U520_DROME (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4) HSP 1 Score: 182.956 bits (463), Expect = 4.175e-46 Identity = 87/103 (84.47%), Postives = 96/103 (93.20%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 QVLVSTATLAWGVNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++YLSL+NQQLPIESQF+SKL D LNAEIVLGT Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGT 909 HSP 2 Score: 77.411 bits (189), Expect = 2.470e-14 Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 QV V + L WG+++ AH VII TQ YN + ++ + D++QM+GRA RP D+ + +++ S+ ++ +N+ LPIES ++ D NAE+V T Sbjct: 1641 QVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKT 1743
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: U520_CAEEL (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 7.121e-46 Identity = 88/103 (85.44%), Postives = 93/103 (90.29%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GEGI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGT Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGT 902
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: U520_HUMAN (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2) HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44 Identity = 86/102 (84.31%), Postives = 93/102 (91.18%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG 307 QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNAEIVLG Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 908 HSP 2 Score: 76.6406 bits (187), Expect = 4.214e-14 Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 QV+V++ +L WG+N+ AH VII TQ YN + A+ + D++QM+G A RP D G +I+ S+ ++ + + LP+ES + D NAEIV T Sbjct: 1642 QVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKT 1744
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: BRR2_YEAST (Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae GN=BRR2 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 8.148e-42 Identity = 78/102 (76.47%), Postives = 92/102 (90.20%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG 307 QVLV TATLAWGVNLPAHTVIIKGT +Y+PEKG+W +LSP D++QMLGRAGRP+YD++GEGIIIT S ++YYLS++NQQLPIESQFVSKL D LNAE+V G Sbjct: 826 QVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAG 927
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HELCL_DICDI (Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.177e-40 Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 QVL+STATLAWGVNLPAHTVIIKGTQIYNPEKG W ELSPLD+ QMLGRAGRP +D GEGIIIT EL++YLSL+N QL IESQF+S++AD LNAEIVLG+ Sbjct: 877 QVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGS 978
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HELC1_HUMAN (Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3) HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34 Identity = 69/103 (66.99%), Postives = 85/103 (82.52%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 +VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+ LAD LNAEI LGT Sbjct: 804 KVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIALGT 906 HSP 2 Score: 103.605 bits (257), Expect = 3.219e-22 Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 QVL++T+TLAWGVN PAH VIIKGT+ Y+ + + + D++QM+GRAGRPQ+D G+ +I+ + +Y + + P+ES + L+D LNAEI GT Sbjct: 1641 QVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGT 1743
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HELC1_DICDI (Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum GN=ascc3 PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 5.294e-33 Identity = 65/103 (63.11%), Postives = 83/103 (80.58%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 +VLV TATLAWGVNLPAHTVIIKGTQ+YN + G + +L D+MQ+ GRAGRPQ+D+ GEG ++T +L +YLSLM+ +PIES+F++ L D LNAEIVLGT Sbjct: 806 KVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGT 908 HSP 2 Score: 103.219 bits (256), Expect = 4.204e-22 Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 Q+L+ST+TLAWGVNLPAH VIIKGT+ ++ + + + D++QM+GRAGRPQ+D G+ +++ + ++Y + P+ES L D LNAEIV GT Sbjct: 1640 QILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGT 1742
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: MUG81_SCHPO (Putative helicase mug81 OS=Schizosaccharomyces pombe GN=mug81 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 5.478e-30 Identity = 58/103 (56.31%), Postives = 81/103 (78.64%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 ++L TATLAWGVNLPA+ V+IKGTQ+Y+P+KG++ +L LD++Q+ GRAGRPQ++S IIT H +L +Y+S++ QQ PIES+F +L D LNAE+ LGT Sbjct: 613 KILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGT 715 HSP 2 Score: 98.9821 bits (245), Expect = 7.928e-21 Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 Q+L++T+TLAWGVN PAH VI+KGT+ Y+ + G + ++ D++QMLGRAGRPQ+D+ G I + +Y ++ P+ES L + LNAEI GT Sbjct: 1448 QILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGT 1550
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: SLH1_YEAST (Antiviral helicase SLH1 OS=Saccharomyces cerevisiae GN=SLH1 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.824e-25 Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS-YGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 +VL TATLAWGVNLPA VIIKGTQ+Y+ +KG + +L D++Q+ GR GRP + S G GI+ T + L +Y+SL+ QQ PIES+F SKL D LNAEI LG+ Sbjct: 620 KVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGS 723 HSP 2 Score: 103.219 bits (256), Expect = 4.204e-22 Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310 Q+L++T+TLAWGVNLPAH VIIKGTQ ++ + + ++ DI+QM+GRAGRP YD+ G I+ T S+ +Y +N P+ES L D L AEI G+ Sbjct: 1456 QILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGS 1558 The following BLAST results are available for this feature:
BLAST of CB322132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CB322132 ID=CB322132; Name=CB322132; organism=Citrus sinensis; type=EST; length=311bpback to top |