CB322205
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX29_XENLA (ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.493e-23 Identity = 50/120 (41.67%), Postives = 87/120 (72.50%), Query Frame = 3 Query: 114 EVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTIDGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQNSTIANNEVVKSMIQLLLEEDK 473 + +HPSS+N L+ + +L++ EKV+ +KVFLR+TT++SPF +LLFGG I VQH+ +T+D W+ AP +IAV+FKELR+ + S+L+Q + NP+ S ++++ ++I+ L++ ++ Sbjct: 1247 KAQVHPSSVNRDLQIYG--WLLYQEKVKYSKVFLRETTLISPFPVLLFGGDIAVQHRERLLTVDDWIHFQAPVKIAVIFKELRILIESVLKQKLENPKMS--LKDDMILNIIKELIKTER 1362
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX29_HUMAN (ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 8.481e-23 Identity = 48/119 (40.34%), Postives = 87/119 (73.11%), Query Frame = 3 Query: 114 EVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTIDGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQNSTIANNEVVKSMIQLLLEED 470 + +HPSS+N L++ H +L++ EK+ +V+LR+TT+++PF +LLFGG I VQH+ ++IDGW+ AP +IAV+FK+LR+ + S+LR+ + NP+ S + N+++++ + +L+ E+ Sbjct: 1253 KAQVHPSSVNRDLQT--HGWLLYQEKIRYARVYLRETTLITPFPVLLFGGDIEVQHRERLLSIDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPKMS-LENDKILQIITELIKTEN 1368
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX29_MOUSE (ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22 Identity = 47/119 (39.50%), Postives = 87/119 (73.11%), Query Frame = 3 Query: 114 EVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTIDGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQNSTIANNEVVKSMIQLLLEED 470 + +HPSS+N L+++ +L++ EKV +V+LR+TT+++PF +LLFGG I VQH+ +++DGW+ AP +IAV+FK+LR+ + S+LR+ + NP+ S + N+++++ + +L+ E+ Sbjct: 1249 KAQVHPSSVNRDLQTYG--WLLYQEKVRYTRVYLRETTLITPFPVLLFGGDIEVQHRERLLSVDGWIYFQAPVKIAVIFKQLRVLIDSVLRKKLENPKMS-LENDKILQIITELIKTEN 1364
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX57_HUMAN (Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 2.553e-19 Identity = 47/101 (46.53%), Postives = 73/101 (72.28%), Query Frame = 3 Query: 117 VHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLF-GGSINVQHQTGQVTI---DGWLK-VTAPAQIAVLFKELRLTLHSILRQMIRNP 404 VHIHPSS+N Q++ F+ P+L++ EK++T++VF+RD ++VS + ++LF GG +NVQ Q G+ + DGW++ V A Q+A L KELR L +L+ I+NP Sbjct: 1262 VHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGEFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNP 1362
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 5.688e-19 Identity = 47/101 (46.53%), Postives = 72/101 (71.29%), Query Frame = 3 Query: 117 VHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLF-GGSINVQHQTGQVTI---DGWLK-VTAPAQIAVLFKELRLTLHSILRQMIRNP 404 VHIHPSS+N Q++ F+ P+L++ EK++T++VF+RD ++VS + ++LF GG +NVQ Q G + DGW++ V A Q+A L KELR L +L+ I+NP Sbjct: 1264 VHIHPSSVNYQVRHFDSPYLLYHEKIKTSRVFIRDCSMVSVYPLVLFGGGQVNVQLQRGAFVVSLDDGWIRFVAASHQVAELVKELRCELDQLLQDKIKNP 1364
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14 Identity = 45/126 (35.71%), Postives = 75/126 (59.52%), Query Frame = 3 Query: 117 VHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTI--DGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQ----NSTIANN-EVVKSMIQLLLEEDK 473 V +HP S+N + F + +L++ K+ T+ ++L D T VSP+ +L FGG I++Q Q TI D W+ +PA+IA L KELR L +L++ I +P N T + + V+ ++I L+ ++K Sbjct: 867 VAVHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDNDQETIAVDEWIVFQSPARIAHLVKELRKELDILLQEKIESPHPVDWNDTKSRDCAVLSAIIDLIKTQEK 992
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13 Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 3 Query: 117 VHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSINVQHQTGQ--VTIDGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNP 404 V IHP S+N + F + +L++ K+ T+ ++L D T VSP+ +L FGG I++Q Q + +D W+ +P +IA L K LR L S+L++ I +P Sbjct: 860 VSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDISIQKDKDQEIIAVDEWIVFQSPERIAHLVKGLRKELDSLLQEKIESP 957
BLAST of CB322205 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.960e-11 Identity = 46/142 (32.39%), Postives = 71/142 (50.00%), Query Frame = 3 Query: 96 WYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVET-----NKVFLRDTTIVSPFSILLFGGSINVQHQTGQVTI-----------DGWLKVTAPAQIAVLFKELRLTLHSILRQMIRNPQNS-TIANNEVVKSMIQLLLEED 470 ++D V +HPSS K FE +L K T +KV+LRD T V F++LLFGG + + H G + I + W+++ A A+I VL +LR L ++L I PQ+ + + V S+I +L+ D Sbjct: 1422 YFDRNGRVFLHPSSTLFSCKGFESSYLTTFAKSSTGAGADSKVYLRDATEVPLFALLLFGGKLKINHFAGGIGIGSNQSGGDAKDENWVRLRANARIGVLCAQLRRLLDAVLDHAIDEPQDMFAVPGCKDVLSVIGQVLQRD 1563 The following BLAST results are available for this feature:
BLAST of CB322205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB322205 ID=CB322205; Name=CB322205; organism=Citrus sinensis; type=EST; length=572bpback to top |