CB417348

Overview
NameCB417348
Unique NameCB417348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ1_DROME (DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.373e-20
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE---KGSPGFDAGHPGNPGGYTYFTSGGP 269
            K+LG+ER AS  EI+KA+ KL+L+YHPDKNK+  A+E+F EI  AY++LSD++KR  +D YG++    G PG D G  G PG YTY   G P
Sbjct:    7 KILGLERKASDDEIKKAYRKLALKYHPDKNKSPQAEERFKEIAEAYEVLSDKKKRDIFDNYGEDGLKGGQPGPDGG--GQPGAYTYQFHGDP 96          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLA (Chaperone protein dnaJ OS=Lactococcus lactis subsp. lactis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.381e-19
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 3
Query:    9 LGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYTYFTSGGPGQSQF 284
            LGV++NASQ EI+KA+ K+S +YHPD NK + A+EK+ E+  AY+ LSDE+KR  YD YG+   + GF  G  G   G++ F  G  G   F
Sbjct:   10 LGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEEKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGGSGGFGGF 101          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLTR (Chaperone protein dnaJ OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.678e-18
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFD 215
            K+LGV+RNAS  EI+KA+ KL+L+YHPD+N  NK A+EKF EI  AY++LSD EKR  YD YG E  S GFD
Sbjct:    8 KLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGASGGFD 79          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGA (Chaperone protein dnaJ OS=Mycoplasma gallisepticum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.192e-18
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE-KGSPGFDAGHPGNPGGYTYFTS 260
            ++L V R+A+Q++I+KAF KL+++YHPD+NK+  A+EKF E+N AY++LSDEEKRK YD YG E   + GF   H G    Y  F S
Sbjct:    9 EILEVSRSATQQDIKKAFRKLAMKYHPDRNKDSDAEEKFKEVNEAYEVLSDEEKRKLYDTYGHEGLNASGF---HQGGFNPYDVFNS 92          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLS (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.192e-18
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 3
Query:    9 LGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYTYF--TSGGPG 272
            LGV++NASQ EI+KA+ K+S +YHPD NK + A++K+ E+  AY+ LSDE+KR  YD YG+   + GF  G  G   G++ F   SGG G
Sbjct:   10 LGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGASGGFG 99          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLM (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.192e-18
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 3
Query:    9 LGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYTYF--TSGGPG 272
            LGV++NASQ EI+KA+ K+S +YHPD NK + A++K+ E+  AY+ LSDE+KR  YD YG+   + GF  G  G   G++ F   SGG G
Sbjct:   10 LGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGASGGFG 99          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.738e-18
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYTYFTSGGPGQSQFTS 290
            K+LG+   A++ EI+KA+ K++L+YHPDKNK   A+EKF EI  AYD+LSD +KR  YD YG+E    G   G  G  GG  ++T  G   + F S
Sbjct:    7 KILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEEGLKTG--GGSSGGSGGSFHYTFHGDPHATFAS 100          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: SPJ1_SCHPO (DnaJ-related protein spj1 OS=Schizosaccharomyces pombe GN=spj1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.883e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE--KGSPGFDAGHPGN--PGG 242
            ++LGV ++AS+ EI+KA+ +L+ Q+HPDKN  N+ AQEKF EIN A+++LSD E+RK YD YG+E   G PG   G PG   PGG
Sbjct:   10 QILGVSKDASESEIRKAYRQLTKQWHPDKNPGNEEAQEKFIEINKAHEVLSDPEQRKIYDAYGEEGLNGQPGGPGGGPGEGFPGG 94          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLC (Chaperone protein dnaJ OS=Lactococcus lactis subsp. cremoris GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.883e-18
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 3
Query:    9 LGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYTYF--TSGGPG 272
            LGV++NASQ EI+KA+ K+S +YHPD NK + A++K+ E+  AY+ LSDE+KR  YD YG+   + GF  G  G   G++ F   SGG G
Sbjct:   10 LGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEDKYKEVQEAYETLSDEQKRAAYDQYGEAGRNGGFGGGGFGGASGFSGFGGRSGGFG 99          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_PEDPA (Chaperone protein dnaJ OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.377e-18
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 3
Query:    6 VLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYTYFTSG---------GPGQSQFTSRPGEWQNM 314
            +LGV ++AS  EI+KA+ KLS +YHPD NK   A++KF ++N AY++L D +KR  YD +G    + GF  G  G  GG++ F  G         G GQ Q  ++P + +++
Sbjct:   10 ILGVSKDASDDEIKKAYRKLSKKYHPDINKAPDAEQKFKDVNEAYEVLGDSQKRAQYDQFGSADPNAGFGGGGFGGQGGFSDFGGGFEDIFGSFFGGGQRQSPNQPRQGEDL 121          
The following BLAST results are available for this feature:
BLAST of CB417348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ1_DROME1.373e-2053.26DnaJ protein homolog 1 OS=Drosophila melanogaster ... [more]
DNAJ_LACLA3.381e-1947.83Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_WOLTR1.678e-1862.50Chaperone protein dnaJ OS=Wolbachia sp. subsp. Bru... [more]
DNAJ_MYCGA2.192e-1851.72Chaperone protein dnaJ OS=Mycoplasma gallisepticum... [more]
DNAJ_LACLS2.192e-1848.89Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_LACLM2.192e-1848.89Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNJB5_MOUSE3.738e-1846.88DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]
SPJ1_SCHPO4.883e-1854.12DnaJ-related protein spj1 OS=Schizosaccharomyces p... [more]
DNAJ_LACLC4.883e-1848.89Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNAJ_PEDPA6.377e-1839.29Chaperone protein dnaJ OS=Pediococcus pentosaceus ... [more]

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Properties
Property NameValue
Genbank descriptionEST0428 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P100 similar to DNAJ homolog (acc# NP_187509), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417348 ID=CB417348; Name=CB417348; organism=Citrus sinensis; type=EST; length=358bp
ACAAGGTTCTTGGCGTTGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAA
GCTTTCCACAAGCTCTCTCTTCAATATCACCCGGACAAGAACAAAAATAA
GGCTGCTCAGGAGAAGTTCGCTGAGATTAATAATGCATATGATATTTTAT
CTGATGAAGAGAAGAGGAAAAATTATGATTTGTATGGGGATGAGAAGGGC
AGTCCTGGATTTGATGCTGGGCATCCTGGGAATCCAGGTGGGTATACATA
CTTCACAAGTGGTGGACCGGGACAAAGCCAGTTTACCTCTAGACCTGGTG
AATGGCAGAATATGGGGGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCC
TTCGGCGG
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