CB417366

Overview
NameCB417366
Unique NameCB417366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MFRN_DICDI (Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 2
Query:    2 KRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDE---SLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQGVCGCDRFSSSSIG------------NVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASK 421
            KR+ V+EGI  FY+ Y TT++MN P+  V+FA+YE++K+ +  +  N   +E    L+ H                P DVVKT+LQ Q     D  +SS+I             + ++T+  +EG  G +RG  PRM+FH+ ++AI WS YE  K
Sbjct:  153 KRIWVKEGIRGFYSGYTTTLVMNVPYNIVYFASYESLKKIIQPWFNNKNPEERSYQLIDHLVAGGGAGMLAAAFTNPFDVVKTRLQTQS----DFIASSTINSAKSIKRYGGMMDAMKTIWIEEGMDGYLRGMKPRMVFHSMSSAIVWSVYEYFK 303          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MRS3_YEAST (Mitochondrial RNA-splicing protein MRS3 OS=Saccharomyces cerevisiae GN=MRS3 PE=1 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 48/150 (32.00%), Postives = 75/150 (50.00%), Query Frame = 2
Query:    2 KRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQG--------VCGCDRFSSSSIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASKSF 427
            K++   EG+ AFY SY TT++MN PF A +F  YE+  + L     N  ++ + ++H                PLD +KT LQ +G        +   D FS ++       + +  G++G  RGW PR++ + PA AI W+ YE +K F
Sbjct:  171 KQIYQSEGLAAFYYSYPTTLVMNIPFAAFNFVIYESSTKFL-----NPSNEYNPLIHCLCGSISGSTCAAITTPLDCIKTVLQIRGSQTVSLEIMRKADTFSKAA-----SAIYQVYGWKGFWRGWKPRIVANMPATAISWTAYECAKHF 310          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MRS4_YEAST (Mitochondrial RNA-splicing protein MRS4 OS=Saccharomyces cerevisiae GN=MRS4 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 2
Query:    2 KRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQG---VCGCDRFSSSSIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASKSFFQR 436
            K++   EG  AFY SY TT+ MN PF A +F  YE+  +    F+P +  +   ++H                PLD +KT LQ +G   V       +++ G     ++   G++G  RG  PR++ + PA AI W+ YE +K F  +
Sbjct:  161 KQIYQNEGFAAFYYSYPTTLAMNIPFAAFNFMIYESASKF---FNPQNSYNP--LIHCLCGGISGATCAALTTPLDCIKTVLQVRGSETVSIEIMKDANTFGRASRAILEVHGWKGFWRGLKPRIVANIPATAISWTAYECAKHFLMK 303          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MFRN1_RAT (Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 48/149 (32.21%), Postives = 66/149 (44.30%), Query Frame = 2
Query:   20 EGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQGVCGCDRFS----SSSIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASKSFFQRLNDSNK 454
            EG+GAFY SY T + MN PFQ++HF TYE ++  +     N   D +   H                PLDV KT L  Q        +     S + N   TV +  G  G  +G   R+++  P+ AI WS YE  K F  +    N+
Sbjct:  192 EGLGAFYRSYTTQLTMNIPFQSIHFITYEFLQEQV-----NPRRDYNPQSHIISGGLAGALAAAATTPLDVCKTLLNTQENMALSLANVSGRLSGMANAFRTVYQLNGLAGYFKGIQARVIYQMPSTAISWSVYEFFKYFLTKRQLENR 335          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MFRN_CAEEL (Mitoferrin OS=Caenorhabditis elegans GN=W02B12.9 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 47/147 (31.97%), Postives = 63/147 (42.86%), Query Frame = 2
Query:   20 EGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL---MEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQGVCGCD----------RFSSSSIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASK 421
            EG+ AFY SY T + MN PFQA+HF +YE  +  L    ++DP S        H                P+D VKT L  Q     D          R+    I + + T+  + G  G   G   R++F  PA A+ WS YE  K
Sbjct:  163 EGVAAFYRSYTTQLAMNVPFQAIHFMSYEFWQHVLNPEHKYDPKS--------HLIAGGLAGGLAAALTTPMDCVKTVLNTQQAAEADPANRRIFLQARYRYRGISDAVRTIYSQRGLSGFSCGLQARVIFQVPATALSWSVYELFK 301          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MFRN1_HUMAN (Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 48/155 (30.97%), Postives = 68/155 (43.87%), Query Frame = 2
Query:   20 EGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL---MEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQGVCGCDRFS----SSSIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASKSFFQRLNDSNKQDF 463
            EG+GAFY SY T + MN PFQ++HF TYE ++  +     ++P S        H                PLDV KT L  Q        +     S + N   TV +  G  G  +G   R+++  P+ AI WS YE  K F  +    N+  +
Sbjct:  192 EGLGAFYRSYTTQLTMNIPFQSIHFITYEFLQEQVNPHRTYNPQS--------HIISGGLAGALAAAATTPLDVCKTLLNTQENVALSLANISGRLSGMANAFRTVYQLNGLAGYFKGIQARVIYQMPSTAISWSVYEFFKYFLTKRQLENRAPY 338          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MFRN_CAEBR (Mitoferrin OS=Caenorhabditis briggsae GN=CBG02884 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 47/147 (31.97%), Postives = 62/147 (42.18%), Query Frame = 2
Query:   20 EGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL---MEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQGVCGCD----------RFSSSSIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASK 421
            EG  AFY SY T + MN PFQA+HF  YE  ++ L    ++DP S        H                P+D VKT L  Q     D          R+    I + + T+  + G  G   G   R++F  PA A+ WS YE  K
Sbjct:  162 EGFAAFYRSYTTQLAMNVPFQAIHFMGYEFWQQVLNPEHKYDPKS--------HLIAGGLAGGLAAAVTTPMDCVKTVLNTQQAAEADPSNRRIFLKARYRYRGISDAVRTIYSQRGMAGFSCGLQARVIFQVPATALSWSVYELFK 300          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MFRN1_MOUSE (Mitoferrin-1 OS=Mus musculus GN=Slc25a37 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 47/149 (31.54%), Postives = 65/149 (43.62%), Query Frame = 2
Query:   20 EGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQGVCGCDRFS----SSSIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASKSFFQRLNDSNK 454
            EG+GAFY SY T + MN PFQ++HF TYE ++  +     N   D +   H                PLDV KT L  Q        +     S + N   TV +  G  G  +G   R+++  P+ AI WS YE  K    +    N+
Sbjct:  192 EGLGAFYRSYTTQLTMNIPFQSIHFITYEFLQEQV-----NPRRDYNPQSHIISGGLAGALAAAATTPLDVCKTLLNTQENMALSLANVSGRLSGMANAFRTVYQLNGLAGYFKGIQARVIYQMPSTAISWSVYEFFKYILTKRQLENR 335          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: MFRN2_DANRE (Mitoferrin-2 OS=Danio rerio GN=slc25a28 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 49/142 (34.51%), Postives = 63/142 (44.37%), Query Frame = 2
Query:   20 EGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL---MEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQGVCGCDRFSSS-----SIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASK 421
            EG  AFY SY T + MN PFQA+HF TYE ++  L     ++P+S        H                PLDV KT L  Q     D  S S      +G+   TV R  G     +G   R+++  P+ AI WS YE  K
Sbjct:  224 EGALAFYRSYTTQLTMNVPFQALHFMTYEYLQELLNPQRHYNPSS--------HMVSGALAGAIAAAATTPLDVCKTLLNTQESLAVDSVSRSGRHITGLGHAFRTVYRLGGLPAYFKGVQARVIYQMPSTAISWSVYEFFK 357          
BLAST of CB417366 vs. ExPASy Swiss-Prot
Match: YETC_SCHPO (Uncharacterized mitochondrial carrier C8C9.12c OS=Schizosaccharomyces pombe GN=SPAC8C9.12c PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = 2
Query:    8 VLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLDVVKTQLQCQGVCGCD--RFSSSSIGNVIETVVRKEGYRGLMRGWIPRMLFHAPAAAICWSTYEASKSFFQRLNDSNK 454
            V   EG+GAFY SY T + M+ PF A+  ATY+     L   +PN+  D +   H                PLDVVKT LQ +G       R    S+ +V+  +    G     +G  PRM+   PA A+ W+ YEA K    R++ +++
Sbjct:  158 VFRNEGLGAFYISYPTCIAMSIPFTAIQVATYDTCMSFL---NPNAVYDPT--SHIISGGLSGAIASSLTTPLDVVKTLLQTRGSSSIPEVRKCKGSL-DVVRFIYNYGGIPSFFKGIRPRMVVAMPATAVSWAAYEAGKEILIRVSKTSQ 302          
The following BLAST results are available for this feature:
BLAST of CB417366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MFRN_DICDI1.091e-1835.48Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=... [more]
MRS3_YEAST1.475e-1532.00Mitochondrial RNA-splicing protein MRS3 OS=Sacchar... [more]
MRS4_YEAST8.094e-1431.08Mitochondrial RNA-splicing protein MRS4 OS=Sacchar... [more]
MFRN1_RAT3.076e-1332.21Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2... [more]
MFRN_CAEEL4.017e-1331.97Mitoferrin OS=Caenorhabditis elegans GN=W02B12.9 P... [more]
MFRN1_HUMAN6.852e-1330.97Mitoferrin-1 OS=Homo sapiens GN=SLC25A37 PE=1 SV=2[more]
MFRN_CAEBR1.526e-1231.97Mitoferrin OS=Caenorhabditis briggsae GN=CBG02884 ... [more]
MFRN1_MOUSE1.526e-1231.54Mitoferrin-1 OS=Mus musculus GN=Slc25a37 PE=1 SV=1[more]
MFRN2_DANRE2.604e-1234.51Mitoferrin-2 OS=Danio rerio GN=slc25a28 PE=2 SV=1[more]
YETC_SCHPO4.441e-1232.45Uncharacterized mitochondrial carrier C8C9.12c OS=... [more]

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Properties
Property NameValue
Genbank descriptionEST0449 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P131 similar to ripening related mitochondrial carrier protein (acc# CAA07568), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417366 ID=CB417366; Name=CB417366; organism=Citrus sinensis; type=EST; length=697bp
CAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGTTTTACGCTTCATATA
GGACTACGGTGATCATGAACGCGCCGTTTCAAGCAGTTCATTTCGCCACT
TATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGACCCAAACAGTGGGAG
TGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTGCGGCTGCCGGAGCTC
TGGCAGCTACCTTGACAACGCCACTTGATGTTGTTAAAACCCAGTTGCAG
TGCCAGGGTGTCTGTGGCTGTGATAGATTTTCTAGCAGTTCAATTGGGAA
TGTCATTGAAACCGTCGTGAGGAAAGAGGGATATCGTGGGCTAATGAGAG
GGTGGATCCCCAGAATGCTGTTTCATGCTCCGGCTGCCGCTATCTGCTGG
TCAACATACGAAGCATCAAAATCCTTCTTTCAACGACTCAATGACAGTAA
CAAGCAGGATTTCTGATGAAAATTGTAGCTTCTAGCTACAGGCCGCTGAA
TCCTGTGGATATTTCTTGTTGAAATTCCTGGTCATAGCTGCAGTAATGGA
ATAAAACAATTGCCTCAAACTTGCTGTCAGCTCATTCAAAATACGCCTGC
TAGCGAAATGAGGCTGTTTGATGATGCTTATTATCCAATTTATTTACTGG
AATATGAATGAGGGGTAAAAAAAAAGTTGCAAAAAAAAAAAAAAAAA
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