CB417369

Overview
NameCB417369
Unique NameCB417369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length241
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12429 contig Csv1_Contig12429:103..343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA_CUCSA (Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis sativus GN=PCK PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.714e-39
Identity = 73/79 (92.41%), Postives = 78/79 (98.73%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            LWWGKGSPNIEMDEHTFL+NRERAVDYLNSLDKVFVN+QFLNWDPE+RIKV+IVSARAYHSLFMHNMCIRPT+ ELEDF
Sbjct:  205 LWWGKGSPNIEMDEHTFLINRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMHNMCIRPTAGELEDF 283          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA_ARATH (Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.451e-38
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            LWWGKGSPNIEMDEHTF+VNRERAVDYLNSL+KVFVN+Q+LNWDPE+RIKV+IVSARAYHSLFMHNMCIRPT EELE F
Sbjct:  206 LWWGKGSPNIEMDEHTFMVNRERAVDYLNSLEKVFVNDQYLNWDPENRIKVRIVSARAYHSLFMHNMCIRPTQEELESF 284          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA1_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Urochloa panicoides GN=PCK1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.369e-35
Identity = 63/79 (79.75%), Postives = 75/79 (94.94%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            LWWGKGSPNIEMDE  F++NRERA+D+LNSLDKV+VN+QFLNWDPE+RIKV+I+++RAYH+LFMHNMCIRPT EELE F
Sbjct:  159 LWWGKGSPNIEMDERQFVINRERALDFLNSLDKVYVNDQFLNWDPENRIKVRIITSRAYHALFMHNMCIRPTEEELETF 237          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA2_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Urochloa panicoides GN=PCK2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.734e-35
Identity = 63/79 (79.75%), Postives = 74/79 (93.67%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            LWWGKGSPNIEMDE  F++NRERA+DYLNSLDKV+VN+QFLNWD E+RIKV+I+++RAYH+LFMHNMCIRPT EELE F
Sbjct:  161 LWWGKGSPNIEMDERQFVINRERALDYLNSLDKVYVNDQFLNWDSENRIKVRIITSRAYHALFMHNMCIRPTEEELESF 239          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA_MAIZE (Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.240e-34
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            LWWGKGSPNIEMDE TFL+NRERAVDYLNSL KV    Q LNWDPE+RIKV+I+SARAYHSLFMHNMCIRPT EELEDF
Sbjct:  202 LWWGKGSPNIEMDEKTFLINRERAVDYLNSL-KVVRQRQLLNWDPENRIKVRIISARAYHSLFMHNMCIRPTDEELEDF 279          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA2_SALRD (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Salinibacter ruber (strain DSM 13855) GN=pckA2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.450e-22
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            +WWG    N+E+D+HTF +N+ERA DYLN+  +++V + F  WDP HR+KV+I+ +R YH+LFMHNM IRP+ EEL  F
Sbjct:   71 IWWGP--INMEIDDHTFEINKERAQDYLNTRQRIYVMDGFAGWDPAHRLKVRIICSRPYHALFMHNMLIRPSQEELASF 147          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA_DICDI (Phosphoenolpyruvate carboxykinase [ATP] OS=Dictyostelium discoideum GN=pckA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.750e-21
Identity = 44/80 (55.00%), Postives = 64/80 (80.00%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTS-EELEDF 239
            +WWG    NI MD+ +F++NRERA+DYLN+ +K++V + +  WDP++RIKV+++ ARAYH+LFMHNM IRP + EEL +F
Sbjct:  102 IWWGP--VNIAMDDLSFMINRERAIDYLNTQEKIYVIDGYAGWDPKYRIKVRVICARAYHALFMHNMLIRPANREELRNF 179          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA_YEAST (Phosphoenolpyruvate carboxykinase [ATP] OS=Saccharomyces cerevisiae GN=PCK1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.779e-19
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            +WWG    N    E T+ +NRERA DYL + D +++ + F  WDP++RIKV++V ARAYH+LFM NM IRPT EEL  F
Sbjct:   87 IWWGP--VNKPCSERTWSINRERAADYLRTRDHIYIVDAFAGWDPKYRIKVRVVCARAYHALFMTNMLIRPTEEELAHF 163          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA_KLULA (Phosphoenolpyruvate carboxykinase [ATP] OS=Kluyveromyces lactis GN=PCK1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.668e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            +WWG    N    E T+ +NRERA DYL + D +++ + +  WDP +RIKV++V ARAYH+LFM NM IRP+ EELE+F
Sbjct:   81 VWWGP--VNKPCSERTWEINRERAADYLRTRDHIYIVDAYAGWDPRYRIKVRVVCARAYHALFMTNMLIRPSKEELENF 157          
BLAST of CB417369 vs. ExPASy Swiss-Prot
Match: PCKA_CANGA (Phosphoenolpyruvate carboxykinase [ATP] OS=Candida glabrata GN=PCK1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.179e-18
Identity = 42/79 (53.16%), Postives = 56/79 (70.89%), Query Frame = 3
Query:    3 LWWGKGSPNIEMDEHTFLVNRERAVDYLNSLDKVFVNNQFLNWDPEHRIKVQIVSARAYHSLFMHNMCIRPTSEELEDF 239
            +WWG    N    E T+ +NRERA DYL + + ++V + F  WDP++RIKV++V ARAYH+LFM NM IRPT EEL +F
Sbjct:   83 VWWGP--VNKPCSERTWAINRERAADYLRTRETLYVVDAFAGWDPKYRIKVRVVCARAYHALFMTNMLIRPTEEELANF 159          
The following BLAST results are available for this feature:
BLAST of CB417369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PCKA_CUCSA1.714e-3992.41Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis... [more]
PCKA_ARATH1.451e-3889.87Phosphoenolpyruvate carboxykinase [ATP] OS=Arabido... [more]
PCKA1_UROPA4.369e-3579.75Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Uroch... [more]
PCKA2_UROPA9.734e-3579.75Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Uroch... [more]
PCKA_MAIZE8.240e-3484.81Phosphoenolpyruvate carboxykinase [ATP] OS=Zea may... [more]
PCKA2_SALRD9.450e-2254.43Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Salin... [more]
PCKA_DICDI2.750e-2155.00Phosphoenolpyruvate carboxykinase [ATP] OS=Dictyos... [more]
PCKA_YEAST9.779e-1953.16Phosphoenolpyruvate carboxykinase [ATP] OS=Sacchar... [more]
PCKA_KLULA1.668e-1851.90Phosphoenolpyruvate carboxykinase [ATP] OS=Kluyver... [more]
PCKA_CANGA2.179e-1853.16Phosphoenolpyruvate carboxykinase [ATP] OS=Candida... [more]

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Properties
Property NameValue
Genbank descriptionEST0454 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P140 similar to PEP carboxylase (acc# P42066), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417369 ID=CB417369; Name=CB417369; organism=Citrus sinensis; type=EST; length=241bp
AGCTGTGGTGGGGAAAGGGCTCACCCAATATTGAAATGGACGAGCACACT
TTCTTAGTGAACAGAGAACGAGCCGTTGATTACTTAAACTCGTTGGATAA
GGTCTTTGTGAACAACCAATTTCTCAATTGGGACCCAGAACACCGGATCA
AAGTCCAAATTGTTTCTGCCAGAGCTTACCATTCCTTGTTCATGCACAAC
ATGTGCATCCGACCCACGTCAGAAGAATTAGAAGATTTTGG
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