CB417372

Overview
NameCB417372
Unique NameCB417372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9940 contig Csv1_Contig9940:495..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.101e-39
Identity = 83/132 (62.88%), Postives = 99/132 (75.00%), Query Frame = 1
Query:   43 RMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            R   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++ITN+PIL+KG+LT EDA  A++ G AGIIVSNHGARQLDY PATISALEEVV A +GRVP+ +DGGVRRGTDVFKALALGA
Sbjct:  171 RFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALGA 302          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.463e-39
Identity = 82/132 (62.12%), Postives = 98/132 (74.24%), Query Frame = 1
Query:   43 RMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            R   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++IT LPIL+KG+LT EDA  A++ G AGIIVSNHGARQLDY PATISALEEVV A +GR+P+ +DGGVRRGTDVFKALALGA
Sbjct:  171 RFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 302          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.217e-38
Identity = 81/132 (61.36%), Postives = 98/132 (74.24%), Query Frame = 1
Query:   43 RMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGA 429
            R + PP   LKN EG+   K+     S   +     +D SLSWKD+ WL++IT+LPIL+KG++T EDA  AV+ G AGIIVSNHGARQLDY PATI ALEEVV A +GR+P+ +DGGVRRGTDVFKALALGA
Sbjct:  171 RFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGA 302          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 7.152e-31
Identity = 68/137 (49.64%), Postives = 95/137 (69.34%), Query Frame = 1
Query:   43 RMITPPLKNLEGLLSTKVSSDTGSNFEADAN------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQA 435
            R   PP   ++   ++ +S     NF  D+       + +D S+SW+D++WLR +T+LPI+ KGIL  +DA +AV+ G+ GI+VSNHGARQLD  PATI  L E+V AV+G+V + +DGGVR+GTDV KALALGA+A
Sbjct:  174 RFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKA 310          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.593e-30
Identity = 68/137 (49.64%), Postives = 93/137 (67.88%), Query Frame = 1
Query:   43 RMITPPLKNLEGLLSTKVSSDTGSNFEADAN------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQA 435
            R   PP   ++   +  ++     NF  ++       + +D SLSW D+ WLR +T+LPI++KGIL  +DA +AV+ GV GI+VSNHGARQLD  PATI  L E+V AV+G+V + +DGGVR+GTDV KALALGA+A
Sbjct:  174 RFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTSLPIVVKGILRGDDAKEAVKHGVDGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKA 310          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.694e-29
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  112 SNFEADANE----TMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQA 435
            SN +   N+     +D SL+W DL+WL+SIT LPIL+KGI+  +DA  A++ G  GIIVSNHG RQLD  P+TI  L  +   V+GRVP+++DGG+RRGTDV KALA GA A
Sbjct:  218 SNLDGGLNQYIATMIDPSLTWNDLKWLKSITKLPILVKGIMCPKDAELALQYGADGIIVSNHGGRQLDTCPSTIEVLPYISKVVRGRVPLILDGGIRRGTDVLKALAFGANA 329          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.948e-28
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  142 MDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQ 432
            +D S+ W+DL W +S+T LPI++KGILT+EDA  AV+  V GIIVSNHG RQLD  PA+I AL EVV AVKG+V + +DGG+R G DV KALALGA+
Sbjct:  201 IDPSICWEDLSWFQSMTRLPIILKGILTKEDAELAVKHNVHGIIVSNHGGRQLDEVPASIDALTEVVAAVKGKVEVYLDGGIRTGNDVLKALALGAK 297          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.812e-27
Identity = 61/97 (62.89%), Postives = 73/97 (75.26%), Query Frame = 1
Query:  142 MDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQ 432
            +  SL W DL W +SIT LPI++KGILT+EDA  AV+  V GIIVSNHG RQLD   A+I AL EVV AVKG++ + +DGGVR G DV KALALGA+
Sbjct:  199 ISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAK 295          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.673e-27
Identity = 67/124 (54.03%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   61 LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQ 432
            LK+L  L   K +     +F         AS  W DL  L+SIT LPI++KGILT+EDA  A++  V GI+VSNHG RQLD   A+I AL EVV AVKG++ + MDGGVR GTDV KALALGA+
Sbjct:  181 LKDLRALKEEKPTQSVPVSFPK-------ASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGAR 297          
BLAST of CB417372 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.304e-26
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 1
Query:  148 ASLSWKDLEWLRSITNLPILIKGILTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISALEEVVHAVKGRVPILMDGGVRRGTDVFKALALGAQ 432
            +S  W DL  L+S+T LPI++KGILT+EDA  AV+  + GIIVSNHG RQLD  PA+I AL EVV AV G++ + MDGGVR G DV KALALGA+
Sbjct:  203 SSSCWNDLPLLQSMTRLPIILKGILTKEDAELAVKHNIRGIIVSNHGGRQLDEVPASIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALGAR 297          
The following BLAST results are available for this feature:
BLAST of CB417372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX1_ARATH1.101e-3962.88Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX2_ARATH5.463e-3962.12Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX_SPIOL1.217e-3861.36Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
HAOX1_HUMAN7.152e-3149.64Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE1.593e-3049.64Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX_DICDI6.694e-2955.36Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_BOVIN1.948e-2862.89Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN2.812e-2762.89Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_RAT3.673e-2754.03Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
HAOX2_MOUSE5.304e-2662.11Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionEST0457 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P163 similar to glycolate oxidase (acc# NP_188029), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417372 ID=CB417372; Name=CB417372; organism=Citrus sinensis; type=EST; length=436bp
ACAGTAAACATTGTCTTTTGAATCTCACTCAACAACATCTGCAGAATGAT
TACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAGCT
CTGATACAGGTTCGAATTTTGAAGCTGATGCCAACGAGACCATGGATGCT
TCTTTAAGTTGGAAGGATTTAGAATGGCTAAGATCTATTACAAACTTACC
AATTTTGATCAAGGGGATACTTACTCGTGAAGATGCAATAAAAGCTGTGG
AAGTAGGTGTTGCTGGGATTATTGTCTCCAATCACGGAGCTCGACAGTTA
GATTATAGTCCTGCCACTATTTCTGCTCTGGAAGAGGTGGTTCATGCCGT
TAAAGGAAGAGTTCCAATTCTTATGGATGGAGGAGTGCGGCGAGGAACAG
ATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTG
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