CB417375

Overview
NameCB417375
Unique NameCB417375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8360 contig Csv1_Contig8360:56..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LIP1_ARATH (Triacylglycerol lipase 1 OS=Arabidopsis thaliana GN=LIP1 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.994e-67
Identity = 122/175 (69.71%), Postives = 140/175 (80.00%), Query Frame = 2
Query:  122 SNLRRRSPDDGTRSLCSHLIRPNGYPCTEHTVQTKDGYLLALQRVSSRNGNLRVQCGPPVLLVHGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKTSSKIFLVGHSQGTIVSLAALTQPDVVEMVEAAAL 646
            S+L   SP     SLC+ LI P  Y CTEH++QTKDGY+LALQRV+S     R+Q GPPVLL HGLFM GD WFL+S +ESLGFILADHGFDVWV NVRGT +S+GHVTLS+  K FWDWSWQDLA+YDLAEMI ++   ++SKIFLVGHSQGTI+S AALTQP V EMVEAAAL
Sbjct:   21 SHLLHGSP---VNSLCADLIHPANYSCTEHSIQTKDGYILALQRVASLGP--RLQSGPPVLLQHGLFMAGDVWFLNSPKESLGFILADHGFDVWVGNVRGTRYSYGHVTLSDTDKEFWDWSWQDLAMYDLAEMIQYLYSISNSKIFLVGHSQGTIMSFAALTQPHVAEMVEAAAL 190          

HSP 2 Score: 30.0314 bits (66), Expect = 4.994e-67
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  648 LSPISYLDHITAPL 689
            L PISYLDH+TAPL
Sbjct:  191 LCPISYLDHVTAPL 204          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LIP2_ARATH (Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.989e-33
Identity = 76/205 (37.07%), Postives = 116/205 (56.59%), Query Frame = 2
Query:   44 SLSSSLVVGAIFALLLREISAVKTDVSNLRRRSPD-DGTRSLCSHLIRPNGYPCTEHTVQTKDGYLLALQRV-SSRNGNLRVQCGP--PVLLVHGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKTSSKIFLVGHSQGTIVSLAALTQPDVVEMVEAAAL 646
            S+  +L V   FAL L+ + A  T    L  + P       +C+  +   GY C EH V T+DGY+L +QR+   R G +    G   PVL+ HG+ + G +W L+  +++L  ILAD GFDVW+ N RGT +S  H  L+   ++FW+W+W +L  YDL  M   I+  T  KI  +GHS GT++  A+ ++  +V+ V +AA+
Sbjct:   11 SIGLALSVLIFFALSLKTLEARGT-FGRLAGQPPQRTAAGGICASSVHIFGYKCEEHDVVTQDGYILNMQRIPEGRAGAVAGDGGKRQPVLIQHGILVDGMSWLLNPADQNLPLILADQGFDVWMGNTRGTRFSRRHKYLNPSQRAFWNWTWDELVSYDLPAMFDHIHGLTGQKIHYLGHSLGTLIGFASFSEKGLVDQVRSAAM 214          

HSP 2 Score: 22.3274 bits (46), Expect = 1.989e-33
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  630 LRLLLFLSPISYLDHIT 680
            +R    LSP++YL H+T
Sbjct:  209 VRSAAMLSPVAYLSHMT 225          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LIPM_HUMAN (Lipase member M OS=Homo sapiens GN=LIPM PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.254e-27
Identity = 67/158 (42.41%), Postives = 92/158 (58.23%), Query Frame = 2
Query:  170 SHLIRPNGYPCTEHTVQTKDGYLLALQRVSSRNGN-LRVQCGPPVLLVHGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKT-SSKIFLVGHSQGTIVSLAAL-TQPDVVEMVE 634
            S +I+  GYPC E+ V T+DGY+L++ R+        +    P VLL HGL  G   W  +    SLGFILAD GFDVW+ N RG  WS  H TLS     FW +S+ ++A +DL  +I FI  KT   KI+ VG+SQGT +   A  T P++ + ++
Sbjct:   50 SEIIQHQGYPCEEYEVATEDGYILSVNRIPRGLVQPKKTGSRPVVLLQHGLVGGASNWISNLPNNSLGFILADAGFDVWMGNSRGNAWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQEKIYYVGYSQGTTMGFIAFSTMPELAQKIK 207          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LIPM_MOUSE (Lipase member M OS=Mus musculus GN=Lipm PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.223e-27
Identity = 64/158 (40.51%), Postives = 92/158 (58.23%), Query Frame = 2
Query:  170 SHLIRPNGYPCTEHTVQTKDGYLLALQRVSSRNGNLRVQCGPPVLLV-HGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKT-SSKIFLVGHSQGTIVSLAAL-TQPDVVEMVE 634
            S +I+  GYP  E+ V T+DGY+L++ R+      L+ +   PV+L+ HGL      W  +    SLGFILAD GFDVW+ N RG  WS  H TLS     FW +S+ ++A +DL  +I FI  KT   K++ VG+SQGT +   A  T P++   ++
Sbjct:   50 SEIIKHKGYPSEEYEVATEDGYILSVNRIPRGQTRLKKEGSRPVVLLQHGLLGDASNWISNLPNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQKKVYYVGYSQGTTMGFIAFSTMPELAHKIK 207          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LICH_HUMAN (Lysosomal acid lipase/cholesteryl ester hydrolase OS=Homo sapiens GN=LIPA PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.127e-27
Identity = 67/166 (40.36%), Postives = 91/166 (54.82%), Query Frame = 2
Query:  146 DDGTRSLCSHLIRPNGYPCTEHTVQTKDGYLLALQRVS-SRNGNLRVQCGPPVLLVHGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKT-SSKIFLVGHSQGTIVSLAALTQ-PDVVEMVE 634
            D  T    S +I   G+P  E+ V+T+DGY+L L R+   R  +      P V L HGL      W  +    SLGFILAD GFDVW+ N RG  WS  H TLS     FW +S+ ++A YDL   I FI  KT   +++ VGHSQGT +   A +Q P++ + ++
Sbjct:   30 DPETNMNVSEIISYWGFPSEEYLVETEDGYILCLNRIPHGRKNHSDKGPKPVVFLQHGLLADSSNWVTNLANSSLGFILADAGFDVWMGNSRGNTWSRKHKTLSVSQDEFWAFSYDEMAKYDLPASINFILNKTGQEQVYYVGHSQGTTIGFIAFSQIPELAKRIK 195          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LIPN_MOUSE (Lipase member N OS=Mus musculus GN=Lipn PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 66/162 (40.74%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  170 SHLIRPNGYPCTEHTVQTKDGYLLALQRVSSRNGNLRVQCG-----PPVLLVHGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKT-SSKIFLVGHSQGTIVSLAAL-TQPDVVEMVE 634
            S +I  NGYP  E+ V T DGY+LA+ R+       R Q G     P V + H LF     W  +    SLGFILAD G+DVW+ N RG  WS  H TLS   + FW +S+ ++A YDL  +I FI  KT   K++ +GHS GT +   A  T P++ + ++
Sbjct:   39 SEIIMYNGYPSEEYDVTTADGYILAINRIPHG----RAQTGQTGPRPVVYMQHALFADNAYWLENFANGSLGFILADAGYDVWMGNSRGNTWSRRHKTLSANEEKFWAFSFNEMAKYDLPGIIDFIVNKTGQEKLYFIGHSLGTTIGFVAFSTMPELAQRIK 196          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LICH_MACFA (Lysosomal acid lipase/cholesteryl ester hydrolase OS=Macaca fascicularis GN=LIPA PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 65/158 (41.14%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  170 SHLIRPNGYPCTEHTVQTKDGYLLALQRVS-SRNGNLRVQCGPPVLLVHGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKT-SSKIFLVGHSQGTIVSLAALTQ-PDVVEMVE 634
            S +I   G+P  E+ V+T+DGY+L L R+   R  +      P V L HGL      W  +    SLGFILAD GFDVW+ N RG  WS  H TLS     FW +S+ ++A YDL   I FI  KT   +++ VGHSQGT +   A +Q P++ + ++
Sbjct:   38 SEIISYWGFPSEEYLVETEDGYILCLNRIPHGRKNHSDKGPKPVVFLQHGLLADSSNWVTNLANSSLGFILADAGFDVWMGNSRGNTWSRKHKTLSVSQDEFWAFSYDEMAKYDLPASINFILNKTGQEQVYYVGHSQGTTIGFIAFSQIPELAKRIK 195          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LIPK_HUMAN (Lipase member K OS=Homo sapiens GN=LIPK PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.088e-26
Identity = 65/158 (41.14%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  170 SHLIRPNGYPCTEHTVQTKDGYLLALQRVSSRNGNL-RVQCGPPVLLVHGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKTSSK-IFLVGHSQGTIVSLAAL-TQPDVVEMVE 634
            S +I   GYP  E+ V TKDGY+L + R+    G   R    P V L HGL      W  +    SL F+LAD G+DVW+ N RG  WS  H+ LS KS  +W +S  ++A YDL   I FI  KT  K ++ VGHSQGT ++  A  T P++ + ++
Sbjct:   36 SQIISYWGYPYEEYDVTTKDGYILGIYRIPHGRGCPGRTAPKPAVYLQHGLIASASNWICNLPNNSLAFLLADSGYDVWLGNSRGNTWSRKHLKLSPKSPEYWAFSLDEMAKYDLPATINFIIEKTGQKRLYYVGHSQGTTIAFIAFSTNPELAKKIK 193          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LIPN_HUMAN (Lipase member N OS=Homo sapiens GN=LIPN PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.033e-26
Identity = 63/158 (39.87%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  170 SHLIRPNGYPCTEHTVQTKDGYLLALQRVSSRNGNLRVQCGPPVLLV-HGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKT-SSKIFLVGHSQGTIVSLAAL-TQPDVVEMVE 634
            S +I  NGYP  E+ V T+DGY+L + R+     + R     PV+ + H LF     W  +    SLGF+LAD G+DVW+ N RG  WS  H TLSE  + FW +S+ ++A YDL  +I FI  KT   K++ +GHS GT +   A  T P++ + ++
Sbjct:   37 SEIIIYNGYPSEEYEVTTEDGYILLVNRIPYGRTHARSTGPRPVVYMQHALFADNAYWLENYANGSLGFLLADAGYDVWMGNSRGNTWSRRHKTLSETDEKFWAFSFDEMAKYDLPGVIDFIVNKTGQEKLYFIGHSLGTTIGFVAFSTMPELAQRIK 194          
BLAST of CB417375 vs. ExPASy Swiss-Prot
Match: LIPK_MOUSE (Lipase member K OS=Mus musculus GN=Lipk PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.268e-26
Identity = 63/157 (40.13%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  170 SHLIRPNGYPCTEHTVQTKDGYLLALQRVSSRNGNLRVQCGPPVL-LVHGLFMGGDAWFLDSTEESLGFILADHGFDVWVANVRGTHWSHGHVTLSEKSKSFWDWSWQDLALYDLAEMICFINLKTSSK-IFLVGHSQGTIVSLAAL-TQPDVVEMV 631
            S LI   GYP  +H V T+DGY+L   R+    G  R      V+ L HGL    + W  +    SL F+LAD G+DVW+ N RG  WS  H+ LS KS  +W +SW ++A YDL   +  I  K+  K +F VGHSQGT ++  A  T P++ + +
Sbjct:   35 SELISYWGYPYEKHDVITEDGYILGTYRIPHGKGCSRKTAPKAVVYLQHGLIASANNWICNLPNNSLAFLLADSGYDVWLGNSRGNTWSRNHLRLSPKSPQYWAFSWDEMAKYDLPATVNLILEKSGQKQLFYVGHSQGTTIAFIAFSTNPELAKKI 191          
The following BLAST results are available for this feature:
BLAST of CB417375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
LIP1_ARATH4.994e-6769.71Triacylglycerol lipase 1 OS=Arabidopsis thaliana G... [more]
LIP2_ARATH1.989e-3337.07Triacylglycerol lipase 2 OS=Arabidopsis thaliana G... [more]
LIPM_HUMAN1.254e-2742.41Lipase member M OS=Homo sapiens GN=LIPM PE=2 SV=2[more]
LIPM_MOUSE6.223e-2740.51Lipase member M OS=Mus musculus GN=Lipm PE=2 SV=1[more]
LICH_HUMAN8.127e-2740.36Lysosomal acid lipase/cholesteryl ester hydrolase ... [more]
LIPN_MOUSE1.811e-2640.74Lipase member N OS=Mus musculus GN=Lipn PE=2 SV=1[more]
LICH_MACFA1.811e-2641.14Lysosomal acid lipase/cholesteryl ester hydrolase ... [more]
LIPK_HUMAN3.088e-2641.14Lipase member K OS=Homo sapiens GN=LIPK PE=2 SV=2[more]
LIPN_HUMAN4.033e-2639.87Lipase member N OS=Homo sapiens GN=LIPN PE=2 SV=2[more]
LIPK_MOUSE5.268e-2640.13Lipase member K OS=Mus musculus GN=Lipk PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionEST0462 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P169 similar to lysosomal acid lipase (acc# NP_179126), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417375 ID=CB417375; Name=CB417375; organism=Citrus sinensis; type=EST; length=690bp
CCGCGCACTCAATTATCTCCGAGACAGATATGATATGAGGAGGTCGCTGT
CATCATCACTGGTGGTTGGCGCGATTTTCGCTCTCCTCCTACGCGAAATC
TCCGCCGTCAAAACCGATGTTTCGAATCTACGCCGTCGATCACCGGACGA
TGGCACTCGCTCACTCTGCTCTCACCTCATCCGGCCCAACGGCTATCCCT
GCACCGAACACACCGTTCAAACAAAGGATGGTTACTTACTGGCTCTTCAA
AGAGTGTCATCTCGCAATGGGAATCTAAGAGTTCAATGCGGTCCCCCTGT
TTTGCTTGTGCATGGACTCTTCATGGGAGGTGATGCGTGGTTTTTGGATT
CTACGGAAGAGTCATTGGGCTTCATCCTTGCAGATCATGGTTTTGATGTA
TGGGTTGCAAATGTGCGCGGGACGCATTGGAGTCATGGCCATGTAACTTT
ATCCGAGAAGAGTAAGAGCTTTTGGGATTGGAGTTGGCAGGATTTGGCTC
TGTATGACCTTGCTGAAATGATATGTTTCATAAATTTGAAAACAAGCTCC
AAAATTTTCCTTGTTGGACATTCACAGGGAACCATCGTGTCTTTGGCTGC
TCTCACTCAGCCAGACGTAGTGGAAATGGTTGAGGCTGCTGCTCTTTTTG
AGTCCTATATCATACTTGGATCATATCACTGCTCCACTTG
back to top