CB417379

Overview
NameCB417379
Unique NameCB417379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417379 vs. ExPASy Swiss-Prot
Match: SMC22_ARATH (Structural maintenance of chromosomes protein 2-2 OS=Arabidopsis thaliana GN=SMC2-2 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.192e-50
Identity = 97/155 (62.58%), Postives = 120/155 (77.42%), Query Frame = 3
Query:  174 GHENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRDPYKAREE 638
            GHEN RERLVME EA+ +E + L++QL S+R QI+ L S+V  Q+ KV   + +HDQ+ SEL  I  KMKECD+QISG + EQ+K   K+ + KL+RK+LENEV RMEME K+CS KVDKL+EKH WI SEK+LFG  GTDYDFESRDP+KAREE
Sbjct:  809 GHENVRERLVMEQEAVTQEQSYLKSQLTSLRTQISTLASDVGNQRAKVDAIQKDHDQSLSELKLIHAKMKECDTQISGSIAEQEKCLQKISDMKLDRKKLENEVTRMEMEHKNCSVKVDKLVEKHTWITSEKRLFGNGGTDYDFESRDPHKAREE 963          
BLAST of CB417379 vs. ExPASy Swiss-Prot
Match: SMC21_ARATH (Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana GN=SMC2-1 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.009e-49
Identity = 96/154 (62.34%), Postives = 120/154 (77.92%), Query Frame = 3
Query:  177 HENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRDPYKAREE 638
            HENE+E+LVME EA+ +E +SLE+ L S+  QI+ LTSEV+EQ+ KV   +  HD++ +EL  I  KMKECD+QISG + +Q+K   KL + KLERK+LENEV RME + KDCS KVDKL+EKH WIASEKQLFG+ GTDYDFES DPY ARE+
Sbjct:  813 HENEKEKLVMEEEAMKQEQSSLESHLTSLETQISTLTSEVDEQRAKVDALQKIHDESLAELKLIHAKMKECDTQISGFVTDQEKCLQKLSDMKLERKKLENEVVRMETDHKDCSVKVDKLVEKHTWIASEKQLFGKGGTDYDFESCDPYVAREK 966          
BLAST of CB417379 vs. ExPASy Swiss-Prot
Match: SMC2_CHICK (Structural maintenance of chromosomes protein 2 OS=Gallus gallus GN=SMC2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 47/147 (31.97%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  180 ENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRDP 620
            + E E LV+E E + +E AS + Q  + +  I  L  +V   + +   TR +   A++EL++ +  M+E    I     + +K +++  E +L    LE+++ + + E  D S+ +DKL++++ WIASEK+LFG++ T YDFE+ +P
Sbjct:  816 QQEVEALVLELEQLKQEQASYKQQSEAAQQAIASLKEQVSALEAEAVKTRESLKNAENELSSEKGLMEERTKDIKAKSAKIEKYREQNNELQLSINALEHDINKYQQETADASSTLDKLLKEYKWIASEKELFGQADTTYDFEANNP 962          
BLAST of CB417379 vs. ExPASy Swiss-Prot
Match: SMC2_DICDI (Structural maintenance of chromosomes protein 2 OS=Dictyostelium discoideum GN=smc2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.068e-15
Identity = 40/149 (26.85%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  192 ERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRDPYKAREE 638
            E+L +E + +  E  +L  +    +  I+ +  +V+     ++ T       +  L+ IR  M + +  I  + +E +K+Q ++ E  +  ++L++ + R++ ++++ S  ++  I+KH WI +EKQLF R G+D+DF + DP KA  E
Sbjct:  820 EKLDLEIQEMDNELENLSKETQGNQGTISKMRKDVDTLARSISETNKQIQDIRETLSEIRKDMAQKNDAIRSLHQELEKIQSEITEIDMSTEKLKSRMNRVDKDRQEASKWLEAAIKKHTWIKNEKQLFNRPGSDFDFNATDPSKANSE 968          
BLAST of CB417379 vs. ExPASy Swiss-Prot
Match: SMC2_MOUSE (Structural maintenance of chromosomes protein 2 OS=Mus musculus GN=Smc2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 45/150 (30.00%), Postives = 82/150 (54.67%), Query Frame = 3
Query:  180 ENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRDPYKA 629
            + E E + +E E + +EHAS E QL +V   I     ++E+   +VA  + + ++AQ EL   +  +   D+ I     E  K   +  E++L+ K L++ + + + E  D + KV K++  + WI +EK LFG+  + YDF++ +P +A
Sbjct:  816 QQEVEAITLELEELKREHASNEQQLDAVNEAIKAYEGQIEKMAAEVAKNKESVNKAQDELMKQKQIITAQDNIIKDKCAEVAKHNLQNNESQLKIKELDHSISKHKREADDAAAKVSKMLSDYDWINAEKHLFGQPNSAYDFKTNNPKEA 965          
BLAST of CB417379 vs. ExPASy Swiss-Prot
Match: SMC2_HUMAN (Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 41/150 (27.33%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  180 ENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRDPYKA 629
            + E E + +E E + +EH S + QL +V   I    S++E    +VA  + + ++AQ E+   +  +   D+ I     E  K +++  +++L+ K L++ + + + E +D + KV K+++ + WI +E+ LFG+  + YDF++ +P +A
Sbjct:  816 QQEVEAITLELEELKREHTSYKQQLEAVNEAIKSYESQIEVMAAEVAKNKESVNKAQEEVTKQKEVITAQDTVIKAKYAEVAKHKEQNNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNPKEA 965          
BLAST of CB417379 vs. ExPASy Swiss-Prot
Match: SMC2_XENLA (Structural maintenance of chromosomes protein 2 OS=Xenopus laevis GN=smc2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 41/150 (27.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  180 ENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRDPYKA 629
            + E + LV+E E + +E  + + Q+ +V   +     + +   ++V+  +    +AQ EL   +  +   D +I     E  KL++   + +L+ K LE+ + + + +  D + KV K++  + WIASEK LFG++ T YDF++ +P +A
Sbjct:  817 QQEVDALVLELEELKREQTTYKQQIETVDEAMKAYQEQADSMASEVSKNKEAVKKAQDELAKQKEIIMGHDKEIKTKSSEAGKLRENNNDLQLKIKELEHNISKHKKDSADAAAKVAKMLNDYEWIASEKHLFGQANTAYDFKTNNPKEA 966          
BLAST of CB417379 vs. ExPASy Swiss-Prot
Match: SMC2_PLAF7 (Structural maintenance of chromosomes protein 2 OS=Plasmodium falciparum (isolate 3D7) GN=MAL13P1.96 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 35/144 (24.31%), Postives = 76/144 (52.78%), Query Frame = 3
Query:  180 ENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFES 611
            + E + ++++ E   K+     N L+S    IN +  ++E+ +  +  T+ N  + ++++  ++      ++++  ++K+ + L+ K  E  L+ K+LEN +  ++ + K  S  V  L + H WI S + LF +  T YDFE+
Sbjct:  833 KEEIDDVLLQIENYKKQKEKETNDLSSTDEIINEIEKKIEDIEKNINITKENLKELENKITELQSSFSSYENEMKHVVKKIEDLEKKKSENILDLKKLENTLLDLQKDLKTSSDTVKYLYKTHVWIESYEPLFNKKYTPYDFEN 976          
The following BLAST results are available for this feature:
BLAST of CB417379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMC22_ARATH1.192e-5062.58Structural maintenance of chromosomes protein 2-2 ... [more]
SMC21_ARATH1.009e-4962.34Structural maintenance of chromosomes protein 2-1 ... [more]
SMC2_CHICK2.268e-1731.97Structural maintenance of chromosomes protein 2 OS... [more]
SMC2_DICDI8.068e-1526.85Structural maintenance of chromosomes protein 2 OS... [more]
SMC2_MOUSE1.054e-1430.00Structural maintenance of chromosomes protein 2 OS... [more]
SMC2_HUMAN1.797e-1427.33Structural maintenance of chromosomes protein 2 OS... [more]
SMC2_XENLA8.920e-1427.33Structural maintenance of chromosomes protein 2 OS... [more]
SMC2_PLAF77.068e-1124.31Structural maintenance of chromosomes protein 2 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionEST0466 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P173 similar to chromosome assembly protein (acc# NP_190330), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417379 ID=CB417379; Name=CB417379; organism=Citrus sinensis; type=EST; length=638bp
ACCAAACATGATTTCTGATTGTAACACATCAATTTCATCTTGTATTACTC
TAGTCAGCAGCAATTCTTTCATATTTGTATGTCTGATTCTTACTGAAAAG
ACTTTGATGGTTAAGAATGTGCTGGTTCTCAATAGCTGTTGAAGTGTTGT
CACATTGTTTTGCTTGCTATTAGGGGCATGAGAATGAAAGAGAGAGACTT
GTTATGGAGCATGAAGCAATTGTAAAGGAACATGCTTCTCTAGAGAATCA
GTTGGCTTCAGTGAGGATGCAGATTAATGGTCTCACTTCGGAAGTAGAAG
AACAAAAGAACAAGGTTGCTTTCACACGGACTAATCATGATCAGGCACAA
TCTGAACTAAATGCGATAAGGTTGAAGATGAAGGAATGTGATTCCCAAAT
TAGTGGCATTCTCAAAGAGCAGCAAAAACTTCAAGACAAGCTTGGTGAGG
CAAAGCTTGAGAGAAAGAGGTTGGAAAATGAGGTAAAACGGATGGAGATG
GAGCAGAAAGATTGCTCTACAAAGGTTGACAAATTGATTGAGAAGCATGC
CTGGATTGCATCTGAGAAACAGCTATTTGGAAGAAGTGGGACAGATTATG
ATTTTGAATCACGTGATCCTTATAAAGCAAGGGAAGAA
back to top