CB417380

Overview
NameCB417380
Unique NameCB417380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB417380 vs. ExPASy Swiss-Prot
Match: RAE1L_ARATH (Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 3 
Query:    3 WDTRQPNPVHTQQLPDCCYALTVRYQLMVVGTADRNLIVFNLQNPQVLF 149
            WDTRQ NPVHTQQLPD CY L+V++ LMVVGTADRNLIVFNLQNPQ  F
Sbjct:  141 WDTRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQTEF 189
The following BLAST results are available for this feature:
BLAST of CB417380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RAE1L_ARATH1.828e-1781.63Rae1-like protein At1g80670 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionEST0467 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P174 similar to mRNA transport protein (acc# S71241), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417380 ID=CB417380; Name=CB417380; organism=Citrus sinensis; type=EST; length=420bp
ACTGGGATACAAGGCAGCCAAATCCTGTTCACACTCAACAGCTGCCTGAT
TGCTGCTATGCACTTACGGTGAGATATCAACTTATGGTTGTTGGCACTGC
AGATAGAAATCTAATTGTCTTCAACTTGCAGAATCCTCAGGTATTGTTTT
TTATTCCATGAGAGCATTGATTTATGTGTAAGTTAAATGGGCAAATTTAG
TGCAGGCAGCTGAAGCATGTGTTTTGTGTGGCAGCAGCTGCTGCGACATT
AGTAGTTGGCTGACTAATTTATAAAAAACTATTTGTAATTCTATCATTAT
TGTTCAATTAATAAAGTGAATTAGTTTATCTTTTAGTGGTTTTGTGCATT
TTTATGTGTAAATAGTGTTACTCAAAAACAAATATGACTAGTTGAAAACG
GGAAATACGTATATAAGGTG
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