CB417384

Overview
NameCB417384
Unique NameCB417384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417384 vs. ExPASy Swiss-Prot
Match: TXN4A_MOUSE (Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.666e-36
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 3
Query:  408 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 653
            M+MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DI+ETVY
Sbjct:   39 MKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120          
BLAST of CB417384 vs. ExPASy Swiss-Prot
Match: TXN4A_HUMAN (Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.666e-36
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = 3
Query:  408 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 653
            M+MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINWA++DKQE +DI+ETVY
Sbjct:   39 MKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120          
BLAST of CB417384 vs. ExPASy Swiss-Prot
Match: TXN4A_DICDI (Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum GN=txnl4a PE=3 SV=4)

HSP 1 Score: 132.109 bits (331), Expect = 2.453e-30
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = 3
Query:  408 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 653
            M+ D++L+S+AE +KN AVIY+VDI+EVPD N+MYELYD    MFF+RNKHIM+DLGTGNNNKINWAL +KQ+ IDI+ETVY
Sbjct:   30 MKQDDILASIAEKVKNMAVIYVVDITEVPDLNSMYELYDDCPTMFFYRNKHIMVDLGTGNNNKINWALTNKQDMIDIIETVY 111          
BLAST of CB417384 vs. ExPASy Swiss-Prot
Match: DIMI_SCHPO (Mitosis protein dim1 OS=Schizosaccharomyces pombe GN=dim1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.204e-30
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 3
Query:  408 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 653
            ++ DEVL  +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGNNNKINW L+DKQE IDI+ET++
Sbjct:   39 IKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120          
BLAST of CB417384 vs. ExPASy Swiss-Prot
Match: DIB1_YEAST (Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae GN=DIB1 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.387e-27
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 3
Query:  408 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 653
            M MDE+LSS+AE ++NFAVIYL DI EV DF+ MYEL DP TVMFF+ NKH+M D GTGNNNK+N+ + DKQE IDI+ET++
Sbjct:   40 MIMDELLSSIAERVRNFAVIYLCDIDEVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGNNNKLNFIVDDKQEMIDILETIF 121          
BLAST of CB417384 vs. ExPASy Swiss-Prot
Match: DIB1_ASHGO (Spliceosomal protein DIB1 OS=Ashbya gossypii GN=DIB1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26
Identity = 53/84 (63.10%), Postives = 67/84 (79.76%), Query Frame = 3
Query:  402 SWMQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 653
            S M MDE+L S+AE + NFA IY+ D +EVPDFN MYEL DP TVMFF++NKH+  D GTGNNNK+N+ + +KQE IDI+ETV+
Sbjct:   38 SCMLMDEILYSIAEKVVNFAAIYVCDTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGNNNKMNFVVDNKQEMIDIIETVF 121          
BLAST of CB417384 vs. ExPASy Swiss-Prot
Match: DIB1_CANGA (Spliceosomal protein DIB1 OS=Candida glabrata GN=DIB1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.914e-25
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  408 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 653
            M MDE+L+SVAE ++NF  IYL DI EVPDFN MYEL D   +MFF++NKH+M D GTGNNNK+N+   DKQE IDI+ET++
Sbjct:   38 MLMDEMLASVAEKVRNFVAIYLCDIDEVPDFNDMYELNDNMCLMFFYKNKHMMCDFGTGNNNKMNFLPDDKQELIDIMETIF 119          
BLAST of CB417384 vs. ExPASy Swiss-Prot
Match: TXN4B_HUMAN (Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  408 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 653
            +Q+D++LS  +  +   A IYLVD+ +   +   +++ Y PSTV FFF  +H+ +D G+ ++ K   + K KQ+FID++E +Y
Sbjct:   39 LQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 120          
The following BLAST results are available for this feature:
BLAST of CB417384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TXN4A_MOUSE6.666e-3684.15Thioredoxin-like protein 4A OS=Mus musculus GN=Txn... [more]
TXN4A_HUMAN6.666e-3684.15Thioredoxin-like protein 4A OS=Homo sapiens GN=TXN... [more]
TXN4A_DICDI2.453e-3070.73Thioredoxin-like protein 4A homolog OS=Dictyosteli... [more]
DIMI_SCHPO3.204e-3071.95Mitosis protein dim1 OS=Schizosaccharomyces pombe ... [more]
DIB1_YEAST7.387e-2767.07Spliceosomal protein DIB1 OS=Saccharomyces cerevis... [more]
DIB1_ASHGO6.254e-2663.10Spliceosomal protein DIB1 OS=Ashbya gossypii GN=DI... [more]
DIB1_CANGA6.914e-2563.41Spliceosomal protein DIB1 OS=Candida glabrata GN=D... [more]
TXN4B_HUMAN7.422e-1136.14Thioredoxin-like protein 4B OS=Homo sapiens GN=TXN... [more]
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Properties
Property NameValue
Genbank descriptionEST0472 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P181 similar to unknown Arabidopsis protein (acc# NP_196446), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417384 ID=CB417384; Name=CB417384; organism=Citrus sinensis; type=EST; length=653bp
ACGCGAACACATTTGAATTTTGAGCATAGTCCAAGTTCTTAAACTTAATA
CACTTAATCAGAGGCTAGGACCCATTTGCCTTTCAAAAATCTCTTACAAA
AATATAATATTTTTCAAGGGATCTAAGGGATCTCTAGAGGACTTGGGTAT
TGTGGATTCCAGTGCAATTTGAGATAACATTCTAGTAATTTTATTTCGTT
TCCTGAATATACATTTCAAGGGAACAAAACTTTGTGGGGGGTGTTGAGAT
GCTAATGCTTTTAGCCACAAATATGATTTCACATATTTATCTCGCTTGTT
ACTGTTTTATTGTGCAAATTCTTTTTTTTTCCCCACCATTTTTATTGATT
TGAAAGCTTGATATTTATATGATGATTAGGTAATTAATTTTTTGTGTAAT
TTCTTGGATGCAGATGGATGAAGTGCTGTCATCAGTTGCCGAGACAATTA
AGAATTTTGCTGTCATCTACCTCGTGGACATTTCAGAGGTGCCTGATTTT
AACACAATGTATGAGCTTTACGATCCCTCAACCGTCATGTTCTTCTTCAG
AAACAAGCACATTATGATTGATCTTGGAACTGGAAATAACAACAAGATCA
ACTGGGCTCTTAAGGACAAGCAGGAGTTCATAGACATTGTTGAGACTGTC
TAC
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