CB417385

Overview
NameCB417385
Unique NameCB417385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417385 vs. ExPASy Swiss-Prot
Match: GCN1L_HUMAN (Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=5)

HSP 1 Score: 99.3673 bits (246), Expect = 1.173e-20
Identity = 55/177 (31.07%), Postives = 97/177 (54.80%), Query Frame = 2
Query:    2 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAMGD--DDMDVQSLAKEAAETVTLVIDEEGIESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRV 526
            P LL  L+D++ S+ ALDGLKQ++++++  VLP+++PKL   P+   N   L  L+ VAG  L  HLG ILPA++ A+ +     D Q         +  V D+ G   ++ +LL+     +  +R+++A ++  +   SK        +++S LI L +DS    +  +W+AL+ +
Sbjct: 2046 PFLLKQLDDEEVSEFALDGLKQVMAIKSRVVLPYLVPKLTTPPV---NTRVLAFLSSVAGDALTRHLGVILPAVMLALKEKLGTPDEQLEMANCQAVILSVEDDTGHRIIIEDLLEATRSPEVGMRQAAAIILNIYCSRSKADYTSHLRSLVSGLIRLFNDSSPVVLEESWDALNAI 2219          
BLAST of CB417385 vs. ExPASy Swiss-Prot
Match: GCN1L_DICDI (Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.412e-20
Identity = 63/182 (34.62%), Postives = 100/182 (54.95%), Query Frame = 2
Query:    2 PTLLHALEDDQTSDTA---LDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL-SAMGDDDMDVQSLAKEAAETVTLVIDEEGIESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 535
            P L+  L++    D A   LDGL+Q++ VR++ VLP ++PKL+  P+S  N  AL +LA  AG GL  HL TI+P+L+ S    + +      KEAA ++   IDE+G ++L+  L++       +IR  +  LIG FY N    + +    ++ +L+ L +D D+    AA  AL  +  S
Sbjct: 2047 PQLIQLLDNSNNKDLAGYALDGLRQVILVRSSIVLPVLIPKLLSRPISTSNVTALSSLAADAGEGLYVHLSTIIPSLIESFTNPNTISNAKEIKEAAVSICKSIDEQGWDTLIGLLIEQTEIRLPNIRLGACELIGEFY-NGNTMVTEYPEELLLSLLSLFNDPDALVQQAANNALGFITKS 2227          
BLAST of CB417385 vs. ExPASy Swiss-Prot
Match: GCN1_YEAST (Translational activator GCN1 OS=Saccharomyces cerevisiae GN=GCN1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 2
Query:    2 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALLSAM--GDDDMDVQSLAKEAAETVTL-VIDEEGIESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVV 529
            P LLH LE    SD AL GL++I+S ++  + P ++P L+  P+ AF A ALG+LAEVAG  L   L  I+ AL+ A+    +D   +   + A + V L V D+EG+  L+ +++  +  +    R +    +  F+  + L      PN +S  I+ L D D   V   + ALS ++
Sbjct: 1992 PYLLHMLESSDNSDFALLGLQEIMSKKSDVIFPILIPTLLAPPIDAFRASALGSLAEVAGSALYKRLSIIINALVDAIIGTSEDESTKGALELALDRVFLSVNDDEGLHPLLQQIMSLLKSDNIEKRIAVLERLPNFFDKTVLDFDVYIPNFVSHAILSLDDEDQRVVNGNFNALSTLL 2170          
BLAST of CB417385 vs. ExPASy Swiss-Prot
Match: GCN1_SCHPO (Translational activator gcn1 OS=Schizosaccharomyces pombe GN=gcn1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.098e-16
Identity = 57/179 (31.84%), Postives = 93/179 (51.96%), Query Frame = 2
Query:    2 PTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSAFNAHALGALAEVAGPGLNFHLGTILPALL-SAMGDDDMDVQSLAKEAAETVTLVIDEEGIESLVSELLKGVGDNQASIRRSSAYLIGYFYKNSKLYLVDEAPNMISTLIVLLSDSDSTTVAAAWEALSRVVAS 535
            P LL  LE +  S+ AL  L++I+S R++ + P ++P L+  P+SAFNA AL +LA+VAG  LN  L +IL AL+ S++     D+ +L     +    V D+EG++ L++             R  +A  +  F++N KL       + +   I L  D     V AA  A + +V++
Sbjct: 2027 PQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALSSLAQVAGVTLNKRLPSILNALMESSLASTGDDLVALNGAIDKVNLSVKDQEGLQILMAHFYSFSESEDFRKRLFAAEHMLVFFQNCKLDYYRYVGDWVRHFITLFEDKSQDVVVAAVAAQNTLVSA 2205          
The following BLAST results are available for this feature:
BLAST of CB417385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GCN1L_HUMAN1.173e-2031.07Translational activator GCN1 OS=Homo sapiens GN=GC... [more]
GCN1L_DICDI3.412e-2034.62Translational activator gcn1 OS=Dictyostelium disc... [more]
GCN1_YEAST3.531e-1732.96Translational activator GCN1 OS=Saccharomyces cere... [more]
GCN1_SCHPO5.098e-1631.84Translational activator gcn1 OS=Schizosaccharomyce... [more]
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Properties
Property NameValue
Genbank descriptionEST0473 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P182 similar to translational activator (acc# B96671), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417385 ID=CB417385; Name=CB417385; organism=Citrus sinensis; type=EST; length=536bp
ACCAACACTTCTTCATGCCTTGGAGGATGATCAAACCTCTGATACTGCTC
TAGATGGCCTCAAACAAATCTTAAGTGTCAGGACTACAGCTGTTTTACCT
CATATTTTGCCAAAGCTCGTTCATCTTCCACTTTCTGCCTTCAATGCACA
TGCTTTGGGAGCATTAGCTGAGGTTGCTGGTCCCGGTCTTAACTTTCACC
TTGGCACTATTCTTCCTGCTTTACTTTCTGCTATGGGTGATGATGATATG
GATGTTCAAAGTTTGGCCAAAGAAGCTGCTGAAACAGTGACGTTAGTCAT
AGATGAAGAAGGCATTGAATCTTTAGTATCAGAGCTTCTTAAAGGTGTTG
GAGACAATCAGGCTTCAATTAGAAGAAGTTCTGCTTATCTTATAGGATAC
TTCTACAAAAACAGCAAATTATATTTGGTTGATGAAGCTCCAAACATGAT
TTCTACTTTGATTGTTTTGCTTAGTGATTCAGACTCGACCACTGTTGCGG
CTGCTTGGGAGGCTTTGTCAAGGGTTGTTGCTTCTG
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