CB417396

Overview
NameCB417396
Unique NameCB417396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP1B_DICDI (AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.284e-34
Identity = 71/117 (60.68%), Postives = 86/117 (73.50%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKLYD+N ELVE++GFL  L DL+ D+NPM          EI E S + +F I S  L+KLL ALNECTEWGQVFIL++L +Y   D++EAEN+ ERV PRLQHAN AV
Sbjct:  138 RKTAAVCVAKLYDVNPELVENQGFLNILNDLLGDSNPMVVANAVASLTEIDEVSKKEVFRIHSGNLNKLLAALNECTEWGQVFILNSLCKYTPRDSQEAENVCERVAPRLQHANSAV 254          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP1B1_HUMAN (AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.190e-34
Identity = 72/118 (61.02%), Postives = 90/118 (76.27%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKL+DINA+LVED+GFL++LKDLISD+NPM          EI E+  S  + ++   +++KLLTALNECTEWGQ+FILD L+ Y   D REA++I ERVTPRL HAN AV
Sbjct:  138 RKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINKLLTALNECTEWGQIFILDCLANYMPKDDREAQSICERVTPRLSHANSAV 255          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP1B1_MOUSE (AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.860e-34
Identity = 72/118 (61.02%), Postives = 89/118 (75.42%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKL+DINA+LVED+GFL++LKDLISD+NPM          EI E+  S  + ++   +++KLLTALNECTEWGQ+FILD L  Y   D REA++I ERVTPRL HAN AV
Sbjct:  138 RKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINKLLTALNECTEWGQIFILDCLDNYMPKDDREAQSICERVTPRLSHANSAV 255          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP2B1_RAT (AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.371e-34
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKL+DINA++VED+GFL+SL+DLI+D+NPM          EI E+     + ++    ++KLLTALNECTEWGQ+FILD LS Y   D REA++I ERVTPRL HAN AV
Sbjct:  138 RKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAV 255          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP2B1_MOUSE (AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.371e-34
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKL+DINA++VED+GFL+SL+DLI+D+NPM          EI E+     + ++    ++KLLTALNECTEWGQ+FILD LS Y   D REA++I ERVTPRL HAN AV
Sbjct:  138 RKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAV 255          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP2B1_HUMAN (AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.371e-34
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKL+DINA++VED+GFL+SL+DLI+D+NPM          EI E+     + ++    ++KLLTALNECTEWGQ+FILD LS Y   D REA++I ERVTPRL HAN AV
Sbjct:  138 RKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAV 255          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP2B1_BOVIN (AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 6.371e-34
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKL+DINA++VED+GFL+SL+DLI+D+NPM          EI E+     + ++    ++KLLTALNECTEWGQ+FILD LS Y   D REA++I ERVTPRL HAN AV
Sbjct:  138 RKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAV 255          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP1B1_BOVIN (AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.371e-34
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENSSRP-IFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKL+DINA++VED+GFL+SL+DLI+D+NPM          EI E+     + ++    ++KLLTALNECTEWGQ+FILD LS Y   D REA++I ERVTPRL HAN AV
Sbjct:  138 RKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAV 255          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP1B1_RAT (AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.087e-33
Identity = 71/118 (60.17%), Postives = 89/118 (75.42%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RKTAA+CVAKL+DINA+LVED+GFL++LKDLISD+NPM          EI E+  S  + ++ + +++KLLTALNECTEW Q+FILD L  Y   D REA++I ERVTPRL HAN AV
Sbjct:  138 RKTAAVCVAKLHDINAQLVEDQGFLDTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQIFILDCLGNYMPKDDREAQSICERVTPRLSHANSAV 255          
BLAST of CB417396 vs. ExPASy Swiss-Prot
Match: AP1B1_SCHPO (AP-1 complex subunit beta-1 OS=Schizosaccharomyces pombe GN=apl2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.126e-21
Identity = 47/118 (39.83%), Postives = 72/118 (61.02%), Query Frame = 2
Query:    2 RKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMXXXXXXXXXXEIQENS-SRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAV 352
            RK AA+CV K+YD++ E     GF+E L+ L+SD NP+          EI +    +  F +      +L+ AL+EC EWG++ IL++L+R++ +D +EAE + ERV P+ QHAN  V
Sbjct:  142 RKAAAVCVVKMYDLDREYCASNGFIEQLQALVSDPNPVVVANAVRSLAEIHDQDPEKGYFNVVYTMTDRLMVALSECNEWGRITILNSLARFRTSDIKEAEYVCERVVPQFQHANSGV 259          
The following BLAST results are available for this feature:
BLAST of CB417396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AP1B_DICDI1.284e-3460.68AP-1 complex subunit beta OS=Dictyostelium discoid... [more]
AP1B1_HUMAN2.190e-3461.02AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1... [more]
AP1B1_MOUSE2.860e-3461.02AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1... [more]
AP2B1_RAT6.371e-3459.32AP-2 complex subunit beta OS=Rattus norvegicus GN=... [more]
AP2B1_MOUSE6.371e-3459.32AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1... [more]
AP2B1_HUMAN6.371e-3459.32AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1... [more]
AP2B1_BOVIN6.371e-3459.32AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 P... [more]
AP1B1_BOVIN6.371e-3459.32AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1... [more]
AP1B1_RAT1.087e-3360.17AP-1 complex subunit beta-1 OS=Rattus norvegicus G... [more]
AP1B1_SCHPO2.126e-2139.83AP-1 complex subunit beta-1 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionEST0487 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P196 similar to beta-adaptin (acc# NP_192877), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417396 ID=CB417396; Name=CB417396; organism=Citrus sinensis; type=EST; length=353bp
ACGCAAGACAGCAGCCATATGTGTTGCCAAACTCTATGACATAAATGCTG
AGTTAGTTGAGGATAGGGGCTTTCTAGAATCTCTCAAGGATTTGATATCT
GACAACAATCCAATGGTTGTAGCCAATGCTGTGGCAGCACTTGCAGAGAT
TCAAGAGAATAGTAGTAGACCTATTTTTGAAATCACTAGCCACACACTCT
CGAAGCTCCTTACTGCTCTAAATGAATGCACTGAGTGGGGTCAAGTTTTT
ATATTGGATGCTCTCTCCAGATATAAAGCAGCTGATGCTCGTGAAGCTGA
AAATATAGTGGAGAGGGTTACTCCACGACTACAACATGCTAATTGTGCTG
TTG
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