CB417397

Overview
NameCB417397
Unique NameCB417397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9213 contig Csv1_Contig9213:177..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB417397 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.408e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2 
Query:    2 ICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 109
            ICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA
Sbjct:  459 ICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 494
The following BLAST results are available for this feature:
BLAST of CB417397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VPE_CITSI1.408e-14100.00Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
back to top
Properties
Property NameValue
Genbank descriptionEST0489 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P198 similar to vacuolar processing enzyme (acc# P49043), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417397 ID=CB417397; Name=CB417397; organism=Citrus sinensis; type=EST; length=457bp
CATCTGTAATACAGGAATTGGGAAAGAGAAGATGGCTGAAGCATCAGCAC
AAGCCTGTGAAAATATTCCTTCTGGTCCTTGGAGTTCTCTCGACAAAGGA
TTCAGTGCATAAAGAAGCCGAGAACTGTGCGAATATCATAAGCCAGTCTT
GAAATATGTTAGTTTTCATTATAGTCGCCAATATGGCAATATCTATTTTC
ATTTGGCTGATGATTGCTTCCATTTATGGCAATGTCTATTTTCATTTGGC
TGGTGATTGCTTCCTTGTAATTATTATATTTAAAAGCTCTTCCCTGCCAG
ACCGCAGTTGTAATTTGATAGTATATATTTTGGATGTATGCGATGCTATT
TTATGCTTATGTAGCTATATTTGTTCCTGATTTGTAGACCGTGCAACTCA
ACCCTCTTCGTGGTGTTGCTCTAAATATTGAAATAAAAGCTCTAATTTTG
GATCAAA
back to top