CB417409

Overview
NameCB417409
Unique NameCB417409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length277
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.900e-24
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 3
Query:    3 IKTEDPDLPAFYYDPLIHPIPSTNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275
            IKTEDPDLPAFY+DPLI+PI   +  + ++           F LPE VEP LKDT LYTD TA GI+LL+APRPFN+RSGR RRA DIPLV
Sbjct:  340 IKTEDPDLPAFYFDPLINPISHRHSVKSQEPL---PDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLV 427          
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.900e-24
Identity = 57/91 (62.64%), Postives = 66/91 (72.53%), Query Frame = 3
Query:    3 IKTEDPDLPAFYYDPLIHPIPSTNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275
            IKTEDPDLPAFY+DPLI+PI   +  + ++           F LPE VEP LKDT LYTD TA GI+LL+APRPFN+RSGR RRA DIPLV
Sbjct:  340 IKTEDPDLPAFYFDPLINPISHRHSVKSQEPL---PDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRRALDIPLV 427          
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.523e-23
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 3
Query:    3 IKTEDPDLPAFYYDPLIHPIPSTNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275
            IKTEDPDLPAFYYDPLI+PI  +N +  E+           + LPE V P+ +D  LYTD TA G++LL+APRPFN+RSGR RRA D+PLV
Sbjct:  330 IKTEDPDLPAFYYDPLINPIVLSNLKATEENL-PEGEEEDEWELPEDVRPIFEDVPLYTDNTANGLALLWAPRPFNLRSGRTRRAVDVPLV 419          
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.033e-16
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 3
Query:    3 IKTEDPDLPAFYYDPLIHPIPSTNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275
            IK + PDLP FY+   ++PIPS      + +          F LPE++E +L  T++  D  A GI L +APRPF++RSG  RRAEDIPLV
Sbjct:  326 IKNDSPDLPGFYFGAALNPIPSYKTSGNKNEQSEYGTEDDEFQLPEEIETILSKTEIEHDNLANGIQLYWAPRPFSLRSGTTRRAEDIPLV 416          
BLAST of CB417409 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.481e-11
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 3
Query:    3 IKTEDPDLPAFYYDPLIHPIPS---TNKERREKKAYXXXXXXXXFFLPEQVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLV 275
            +  EDPDLPAF++DP+I+PI S   T  E               F +P   +P      +  + TA+ + LL+AP PFN RSG  +RA+D+PL+
Sbjct:  359 VPPEDPDLPAFFWDPIINPITSRQLTLHELDTSPEDSAIEEDPNFEIP--FDPFFHSEDIEFEHTASALILLWAPHPFNKRSGATKRAQDVPLI 450          
The following BLAST results are available for this feature:
BLAST of CB417409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PRP8_MOUSE5.900e-2462.64Pre-mRNA-processing-splicing factor 8 OS=Mus muscu... [more]
PRP8_HUMAN5.900e-2462.64Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
PRP8_CAEEL6.523e-2358.24Pre-mRNA-splicing factor 8 homolog OS=Caenorhabdit... [more]
PRP8_DICDI2.033e-1645.05Pre-mRNA-processing-splicing factor 8 homolog OS=D... [more]
SPP42_SCHPO7.481e-1138.30Pre-mRNA-splicing factor spp42 OS=Schizosaccharomy... [more]
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Properties
Property NameValue
Genbank descriptionEST0507 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P298 similar to putative splicing factor Prp8 (acc# AAD55467), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417409 ID=CB417409; Name=CB417409; organism=Citrus sinensis; type=EST; length=277bp
ACATAAAAACTGAGGATCCTGATTTGCCTGCATTTTATTATGATCCTTTG
ATACACCCCATACCTTCCACAAACAAGGAGAGGCGTGAAAAGAAAGCTTA
TGATGATGAGGATGAAGATGATGACTTCTTTTTGCCGGAGCAGGTGGAAC
CTTTGCTTAAAGATACCCAGCTTTATACTGATACCACAGCTGCTGGTATT
TCCCTATTATTTGCTCCGCGCCCTTTTAACATGAGATCTGGTCGAATGCG
ACGAGCAGAAGATATACCCCTAGTGTC
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