CB417410

Overview
NameCB417410
Unique NameCB417410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5061 contig Csv1_Contig5061:308..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB417410 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.703e-11
Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 2 
Query:   23 GPADIQKLMQAMSM------APTHQGGNSVPFPTSSFPTMGQVNPANGVTSTGTNKXXXXXXXXXXXXXXXA---KDYDFSSLTAGMFTKH 268
            G AD+QKLMQ M+M       P     N++ +P+SSF TMGQ N  NG+T   T K               +   KD+DFSSL  GMFTKH
Sbjct:  393 GQADLQKLMQNMNMNANMNTRPAQPQENTLQYPSSSFYTMGQANQVNGMTPNSTGKPQSSSATQPTSTTPSSQSGKDFDFSSLMDGMFTKH 483
The following BLAST results are available for this feature:
BLAST of CB417410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD5_ARATH9.703e-1142.86Probable ADP-ribosylation factor GTPase-activating... [more]
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Properties
Property NameValue
Genbank descriptionEST0508 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P301 similar to ARF GAP-like zinc finger-containing protein ZIGA3 (acc# AAG17004), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417410 ID=CB417410; Name=CB417410; organism=Citrus sinensis; type=EST; length=394bp
ACCAACACATCAAGTGGCTGCTGGACCGGCTGATATACAGAAACTTATGC
AGGCTATGAGCATGGCACCAACACATCAAGGGGGGAACTCTGTTCCATTT
CCTACATCCAGTTTTCCTACTATGGGGCAAGTTAATCCAGCAAATGGTGT
GACGAGCACTGGAACAAATAAACAACCATCTGAATCCCCTGTTTCATCAA
CAACTCCTTCCCAATCAGCAAAGGATTATGATTTTTCTTCACTAACGGCA
GGGATGTTCACAAAGCATTGAGTGGCCTTAGGGTTAAAAAGTGCTGCCTT
TTTCAAACCATACCAATATAGTTGAATCACAGGAAATAGCACACTGGGAT
TTATTCTTTCTTCCCCTCCCCTCTTCTTTTTGTTTCCTCTCCTG
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