CB417414

Overview
NameCB417414
Unique NameCB417414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length416
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5775 contig Csv1_Contig5775:41..456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: AIBP_BOVIN (Apolipoprotein A-I-binding protein OS=Bos taurus GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.573e-21
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  139 SSAQNSDSVSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            S    S +V +L+Q EA  + + L     FSVDQLMELAGLS AT+IA+AY  +   R    VL ICGPGNNGGDGLV AR L  FGY+P + YPK
Sbjct:   49 SEVMASSAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSLSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPK 144          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: AIBP_HUMAN (Apolipoprotein A-I-binding protein OS=Homo sapiens GN=APOA1BP PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.040e-20
Identity = 53/96 (55.21%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  139 SSAQNSDSVSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            S    S  V +L+Q EA  + + L     FSVDQLMELAGLS AT+IA+AY  +   R    VL ICGPGNNGGDGLV AR L  FGY+P + YPK
Sbjct:   49 SEVMASTVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYEPTIYYPK 144          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: AIBP_DANRE (Apolipoprotein A-I-binding protein OS=Danio rerio GN=apoa1bp PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.040e-20
Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  163 VSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEY----DRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            V +L Q EA +I E L     FSVDQLMELAGLS AT++A+ Y  +       RVL ICGPGNNGGDGLV AR L  FGY+P V YPK
Sbjct:   53 VKYLGQEEAQQIDEELFSDFSFSVDQLMELAGLSCATAVAKGYPVTSLLKSPARVLVICGPGNNGGDGLVCARHLKLFGYEPSVLYPK 140          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: MU182_SCHPO (Meiotically up-regulated gene 182 protein OS=Schizosaccharomyces pombe GN=mug182 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  160 SVSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            S+S L+   A  +   LM    FS+DQLMELAGLSV+ ++   Y  S+Y +VL  CGPGNNGGDGLVAAR L+ +GYKP V YPK
Sbjct:    2 SISCLSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGDGLVAARHLWQYGYKPTVYYPK 86          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: AIBP_PIG (Apolipoprotein A-I-binding protein OS=Sus scrofa GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 1
Query:  154 SDSVSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            S +V +L+Q EA  + + L     FSVDQLMELAGLS AT+IA+ Y  +   R    VL ICGPGNNGGDGLV AR L  FGY P + YPK
Sbjct:   54 SSAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKVYPPTSLSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYHPTIYYPK 144          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: AIBP_MOUSE (Apolipoprotein A-I-binding protein OS=Mus musculus GN=Apoa1bp PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 53/100 (53.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:  127 SDAMSSAQNSDSVSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            S+ M+ A    +V +L+Q EA  + + L     FSVDQLMELAGLS AT+IA+AY  +   +    VL ICGPGNNGGDGLV AR L  FGY+P + YPK
Sbjct:   43 SETMAGA----AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPK 138          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: YJEFN_DROYA (YjeF N-terminal domain-containing protein GE15417 OS=Drosophila yakuba GN=GE15417 PE=4 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.801e-20
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  163 VSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            + +L Q+EA ++ + L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK
Sbjct:    3 LKYLNQKEAIDVDQELFTEYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLSLMGYTPTIYYPK 86          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: YJEFN_DROER (YjeF N-terminal domain-containing protein GG18945 OS=Drosophila erecta GN=GG18945 PE=4 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.801e-20
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  163 VSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            + +L Q+EA ++ + L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK
Sbjct:    3 LKYLNQKEAIDVDQELFTEYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLSLMGYTPTIYYPK 86          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: YJEFN_DROSE (YjeF N-terminal domain-containing protein GM11335 OS=Drosophila sechellia GN=GM11335 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.149e-19
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  163 VSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            + +L Q+EA  + + L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK
Sbjct:    3 LKYLNQKEAIAVDQELFNEYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLALMGYTPTIYYPK 86          
BLAST of CB417414 vs. ExPASy Swiss-Prot
Match: YJEFN_DROME (YjeF N-terminal domain-containing protein CG2974 OS=Drosophila melanogaster GN=CG2974 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.149e-19
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  163 VSHLTQREAAEIGETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPK 414
            + +L Q+EA  + + L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK
Sbjct:    3 LKYLNQKEAIAVDQELFNDYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLALMGYTPTIYYPK 86          
The following BLAST results are available for this feature:
BLAST of CB417414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
AIBP_BOVIN3.573e-2155.21Apolipoprotein A-I-binding protein OS=Bos taurus G... [more]
AIBP_HUMAN1.040e-2055.21Apolipoprotein A-I-binding protein OS=Homo sapiens... [more]
AIBP_DANRE1.040e-2059.09Apolipoprotein A-I-binding protein OS=Danio rerio ... [more]
MU182_SCHPO1.358e-2056.47Meiotically up-regulated gene 182 protein OS=Schiz... [more]
AIBP_PIG3.025e-2056.04Apolipoprotein A-I-binding protein OS=Sus scrofa G... [more]
AIBP_MOUSE3.025e-2053.00Apolipoprotein A-I-binding protein OS=Mus musculus... [more]
YJEFN_DROYA8.801e-2053.57YjeF N-terminal domain-containing protein GE15417 ... [more]
YJEFN_DROER8.801e-2053.57YjeF N-terminal domain-containing protein GG18945 ... [more]
YJEFN_DROSE1.149e-1953.57YjeF N-terminal domain-containing protein GM11335 ... [more]
YJEFN_DROME1.149e-1953.57YjeF N-terminal domain-containing protein CG2974 O... [more]

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Properties
Property NameValue
Genbank descriptionEST0513 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P308 similar to pyridoxamine 5-phosphate oxidase (acc# BAA97018), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417414 ID=CB417414; Name=CB417414; organism=Citrus sinensis; type=EST; length=416bp
ACGGTTACACTCTCTCTTCTCTTCTCGTATATGAATTGAATTATAACGAA
CTAATGACATAACTCGTTCTATAAGGTGTTTCTCCGTCCAGTTTCAGCTC
CCGCAATTCGTGCGTTTTGCTCAAAATCAGACGCAATGTCGTCGGCACAA
AATTCCGATTCTGTATCTCATCTCACTCAGCGAGAAGCTGCCGAAATTGG
TGAGACTCTCATGGGACCTCTCGGCTTCAGTGTCGATCAGCTTATGGAAT
TGGCTGGTTTGAGTGTAGCAACATCCATAGCAGAGGCTTACAAAGCAAGT
GAATATGATCGTGTGCTTGCGATATGCGGTCCGGGGAACAATGGAGGTGA
TGGTTTGGTAGCTGCTCGACAGCTGTATCATTTTGGATACAAGCCGTTTG
TCTGTTATCCAAAGCG
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