CB417419

Overview
NameCB417419
Unique NameCB417419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11574 contig Csv1_Contig11574:40..371. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB417419 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.764e-28
Identity = 56/64 (87.50%), Postives = 58/64 (90.62%), Query Frame = 3 
Query:  141 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDK 332
            ERKTIDLEQGW++MQ GITKLK ILEGL EP F SE YMMLYTTIYNMCTQKPPHDYSQQLYDK
Sbjct:    2 ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQQLYDK 65
The following BLAST results are available for this feature:
BLAST of CB417419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CUL1_ARATH6.764e-2887.50Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionEST0520 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P318 similar to cullin-like protein (acc# BAB64732), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417419 ID=CB417419; Name=CB417419; organism=Citrus sinensis; type=EST; length=332bp
CACAAACTCTCTACTGGAGAGAGTAAAATTACCTCTGAGCACCTGAGCGA
TTCATTCTTTCTGGTCCCGATTTCGCTTCGAATCAGATTTTAGGGGTTTT
TGGGAATTGAGAAGGGGGGTTTGGCGATATGACGATGAACGAGCGGAAAA
CGATTGACTTAGAACAAGGATGGGAGTTTATGCAGAAGGGAATTACAAAG
TTGAAGAATATACTGGAAGGGCTCCCCGAGCCACAATTCAGCTCTGAAGA
TTACATGATGCTTTACACAACCATCTACAACATGTGCACGCAAAAGCCTC
CCCATGATTACTCTCAACAGCTTTATGACAAG
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