CB417420

Overview
NameCB417420
Unique NameCB417420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB417420 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.012e-16
Identity = 74/227 (32.60%), Postives = 105/227 (46.26%), Query Frame = 2 
Query:   83 LPASHIINPVSTAGNSALTGAAGVGQSVIXXXXXXXXXXXXXXXXQRLIQPTINSRTHRSAGIGEEVAQSASALLNPSALETTPSNANLVKDLPH-KSDVKPSVNISKTQNQGFFTPQTYLNGAATQTDYLDXXXXXXXVCLSQNDVHLQQNNSLS-YNPQSTLRDASQDGEV-PVDPRSNIPYGANIDGPLGSMNPDPLLTKGMMGLGKDFSNNISSGAMLANYEN 754
            +P +  +N +ST G+  +T   G   SV+                  L+QP +    H S    E+V QSA+ +  PS+LE   +   ++KD P    +VK SV  SK  N G  + Q Y+N     TDYL+       V LSQND  L QN  +S +N     +DA  D E+   +  +N  +G N DGPLG            +GLG D  + +S+G   A YEN
Sbjct:  753 VPPTTSVNVISTTGSPLMT--TGATHSVLTEEIPSCSTSPSTANGNHLLQPILGRNKHCSMINTEKVPQSAAPMSVPSSLEAVTATPRMMKDSPKLNHNVKQSVVASKLANAGTGS-QNYVNN-PPPTDYLETASSATSVWLSQNDGLLHQNFPMSNFNQPQMFKDAPPDAEIHAANTSNNALFGINGDGPLGF----------PIGLGTD--DFLSNGIDAAKYEN 963
The following BLAST results are available for this feature:
BLAST of CB417420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARFS_ORYSJ2.012e-1632.60Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionEST0521 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P319 similar to auxin response factor 7a (acc# BAB85916), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417420 ID=CB417420; Name=CB417420; organism=Citrus sinensis; type=EST; length=759bp
ACAATTCTCCCAACCTCCCCAGCAGCCGAAGCTCGAGCAACAGCAACCTG
GCATACTGCCTCAAATGCCCGGACATATGGGGCTCCCTGCATCCCATATT
ATCAATCCAGTTTCTACTGCTGGTAACAGTGCATTGACAGGAGCTGCAGG
AGTAGGGCAGTCTGTGATTACTGATGATAATCCTTCTTGTTCCACTTCAC
CTTCCACAAACAACTGTCAACGCTTGATTCAACCAACAATAAATAGTCGG
ACGCACCGAAGTGCTGGAATTGGAGAGGAAGTGGCTCAATCTGCTTCCGC
ACTTTTGAATCCAAGTGCTTTGGAAACCACGCCATCTAATGCTAACTTGG
TCAAAGATTTGCCACACAAGTCCGATGTTAAGCCTTCAGTGAATATATCC
AAGACTCAGAACCAAGGTTTTTTTACCCCACAAACATACCTAAATGGTGC
AGCTACACAGACAGACTATTTGGACACATCATCTTCCACAACTTCAGTTT
GCCTTTCTCAGAATGATGTCCATTTACAGCAGAACAACTCATTGTCCTAC
AATCCGCAGTCAACGTTGAGAGACGCAAGTCAAGATGGGGAAGTTCCGGT
TGATCCCAGGAGTAACATTCCATATGGGGCTAACATTGATGGACCGTTGG
GATCCATGAATCCTGATCCATTGCTTACAAAGGGCATGATGGGATTGGGG
AAGGATTTCTCGAATAATATCTCTTCAGGAGCAATGCTTGCTAACTATGA
AAATTCAAA
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