CB417421

Overview
NameCB417421
Unique NameCB417421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13474 contig Csv1_Contig13474:56..607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_MIMIV (Tyrosyl-tRNA synthetase OS=Acanthamoeba polyphaga mimivirus GN=YARS PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.304e-21
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1
Query:  166 STPQMSVEEKFRIVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEI 534
            +T   + E +   + SI EEC   D L  L+        Y+GFEPSGR+HIAQ ++  ++ N +   G ++ I++ADWFA++N K+ GD+ KI+ +GRY IE++ A G+  +   F+W+SE I
Sbjct:    3 NTDHTNNEHRLTQLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGRIHIAQALITVMNTNNIIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFI 125          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_PICTO (Tyrosyl-tRNA synthetase OS=Picrophilus torridus GN=tyrS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.027e-14
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  205 VRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 528
            V+   EE +  DE    L   P+   Y GFEPSG  H+   ++ A  +N + +AG K+ + +ADW A +N+KL GDL +I+  G      W+A G+ +  V+F+W+SE
Sbjct:    7 VKKNTEEIVTMDEAFKALNNNPKG--YIGFEPSGNPHLGTCLLLANKINDMVNAGIKMTVLLADWHAMVNDKLNGDLNEIRKSGELFKRAWLAAGLNS-NVKFVWASE 111          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_SULAC (Tyrosyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=tyrS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.937e-13
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  178 MSVEEKFRIVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 528
            M+++EK +++    +E I  DEL   L +  +   Y GFEPSG  HI   ++ A  +  L  AG  + I VA W A +N+KLGGDL+KI+  G+Y +E+    G+   +++ +++ +
Sbjct:    1 MNIDEKIKLITRNTDEVITIDELKKKLEENSKLKGYIGFEPSGLFHIGW-LIWAQKLKDLIKAGVDMSILVATWHAMINDKLGGDLEKIKLAGKYALEVLEGFGVDMSKLKVVYAED 116          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_METKA (Tyrosyl-tRNA synthetase OS=Methanopyrus kandleri GN=tyrS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.797e-12
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  178 MSVEEKFRIVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 528
            M VEE+ ++V     E + E+EL  LL +K +P+ Y GFEPSG++H+   ++    ++ L  AG  V I +AD  A LN K  G L++++ +  Y    ++A+G+   + EF+  SE
Sbjct:    1 MDVEERLKLVTRNAVEVVTEEELRQLLEEKEEPVAYVGFEPSGKVHLGHKLVIDKMID-LQEAGFHVIILLADLHAYLNEK--GTLEEVRELADYNRRCFLAMGLDPNKTEFVLGSE 114          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_SULTO (Tyrosyl-tRNA synthetase OS=Sulfolobus tokodaii GN=tyrS PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  178 MSVEEKFRIVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKV-KIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 528
            M+VEEK +I+     E +  DEL   L +  +   Y GFEPSG  HI   ++ A  +  L   G  +  I VA W A +N+KLGG+L KI+  G+Y IE+  A G+   +V  +++ +
Sbjct:    1 MNVEEKIKIISKNTAEIVTIDELRKKLEENQKLKGYIGFEPSGLFHIGW-LIWAQKLKDLVDVGVDMMSILVATWHAWINDKLGGNLDKIKLAGQYAIEVLNAYGVDMSKVRIVYAED 117          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_ARCFU (Tyrosyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=tyrS PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  178 MSVEEKFRIVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 528
            M + EK R++    EE + E+EL  L+  K +P  Y G+EPSG +H+   +M    +  L  AG ++ + +AD  A LN K  G  ++I  V  Y  +++IA+G+   R +F+  SE
Sbjct:    1 MDITEKLRLITRNAEEVVTEEELRQLIETKEKPRAYVGYEPSGEIHLGH-MMTVQKLMDLQEAGFEIIVLLADIHAYLNEK--GTFEEIAEVADYNKKVFIALGLDESRAKFVLGSE 114          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_METTH (Tyrosyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=tyrS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 38/101 (37.62%), Postives = 64/101 (63.37%), Query Frame = 1
Query:  223 ECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSS 525
            E I  +EL+++L KK +P+ Y G+EPSGR+H+    +    + +L  AG +VKI +AD+ A LN K  G +++I+ +  Y  + ++A+G+  ER EF+  S
Sbjct:   14 EVITPEELMDVL-KKDEPVVYTGYEPSGRIHLGH-ALTVRKLRELQDAGFRVKILLADYHAYLNGK--GSMERIRELADYNQKCFLALGLSPERTEFILGS 110          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_PYRFU (Tyrosyl-tRNA synthetase OS=Pyrococcus furiosus GN=tyrS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.388e-11
Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  178 MSVEEKFRIV-RSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWI-----AVGMRTERVEFLWSSE 528
            M +EE+ ++V +   EE +  + L +L         Y GFE SG +H+  G+M    +     AG K ++++ADW + +N+KLGGDL+ IQ V     ++ +      +G + E+VEF+ +SE
Sbjct:    1 MDIEERIKLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLETIQEVALKYFKVGMEKSIEVMGGKPEKVEFVLASE 123          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_METS3 (Tyrosyl-tRNA synthetase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.813e-11
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 1
Query:  178 MSVEEKFRIVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNKLTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSEEIN 537
            MS+EEK +++     E I  +EL  +L KK QPI Y G+EPSG++H+   V     +  L   G K+KI +AD+ A LN K  G +++I     Y ++ + A+G+       L SS ++N
Sbjct:    1 MSIEEKIQLIEKGTLEVIDTEELKEVL-KKEQPIAYTGYEPSGKIHLGHAV-TVQKLKTLQKLGFKIKILLADFHAFLNGK--GSIEEIAETAEYNMKCFKALGLDETTEFILGSSFQLN 116          
BLAST of CB417421 vs. ExPASy Swiss-Prot
Match: SYY_METMA (Tyrosyl-tRNA synthetase OS=Methanosarcina mazei GN=tyrS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.813e-11
Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  190 EKFRIVRSIGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKALSVNK---LTSAGCKVKIWVADWFAQLNNKLGGDLKKIQTVGRYLIEIWIAVGMRTERVEFLWSSE 528
            ++  +++   +E + E+EL  LL KK  P  Y G+EPSG++H+       L+VNK   L  AG K+ + +AD  A LN K  G L++++ +  Y    +IA+G+  E+ +F++ S+
Sbjct:    2 DRLELIKRNVQEIVTEEELEGLLNKKETPRAYVGYEPSGKIHMGH----VLTVNKLIDLQKAGFKITVLLADVHAYLNRK--GTLEEVRKIADYNRRCFIALGLDEEQTDFVYGSD 111          
The following BLAST results are available for this feature:
BLAST of CB417421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SYY_MIMIV4.304e-2139.02Tyrosyl-tRNA synthetase OS=Acanthamoeba polyphaga ... [more]
SYY_PICTO1.027e-1437.04Tyrosyl-tRNA synthetase OS=Picrophilus torridus GN... [more]
SYY_SULAC1.937e-1334.19Tyrosyl-tRNA synthetase OS=Sulfolobus acidocaldari... [more]
SYY_METKA2.797e-1235.04Tyrosyl-tRNA synthetase OS=Methanopyrus kandleri G... [more]
SYY_SULTO6.230e-1236.44Tyrosyl-tRNA synthetase OS=Sulfolobus tokodaii GN=... [more]
SYY_ARCFU6.230e-1234.19Tyrosyl-tRNA synthetase OS=Archaeoglobus fulgidus ... [more]
SYY_METTH8.137e-1237.62Tyrosyl-tRNA synthetase OS=Methanobacterium thermo... [more]
SYY_PYRFU1.388e-1132.52Tyrosyl-tRNA synthetase OS=Pyrococcus furiosus GN=... [more]
SYY_METS31.813e-1135.83Tyrosyl-tRNA synthetase OS=Methanobrevibacter smit... [more]
SYY_METMA1.813e-1133.62Tyrosyl-tRNA synthetase OS=Methanosarcina mazei GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0522 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P320 similar to tyrosine tRNA ligase (acc# T03741), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417421 ID=CB417421; Name=CB417421; organism=Citrus sinensis; type=EST; length=552bp
TAACCCATCAAAAGCATCCACTGCACAGCCGCCACAGCCGCGCGCCTCCG
ATCGAAGACGTTGTTGTGTCATCCAATGGCGGACGACTCAGCCAATCAAA
TTCCACCAACCGACGAAATCAACTCCATGTCCATCAACTCTCAGAACGAT
GAAGGCTCCTCCACTTCAACTCCTCAGATGAGTGTAGAGGAGAAGTTTCG
GATTGTGAGAAGTATTGGGGAAGAGTGTATACAGGAGGATGAGTTGTTGA
ATCTTCTCACTAAGAAGCCTCAACCCATTTGCTATGATGGGTTTGAACCA
TCCGGAAGAATGCACATTGCTCAGGGTGTTATGAAGGCATTAAGTGTGAA
CAAACTGACCTCTGCTGGTTGTAAGGTGAAAATTTGGGTGGCTGATTGGT
TTGCACAGCTAAACAACAAATTGGGAGGTGACTTGAAGAAAATTCAAACA
GTCGGGCGTTATTTGATAGAGATATGGATAGCTGTTGGGATGCGTACTGA
AAGAGTTGAGTTTTTGTGGTCTTCAGAAGAAATTAACGCCAGGGCAGACG
AG
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