CB417423

Overview
NameCB417423
Unique NameCB417423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417423 vs. ExPASy Swiss-Prot
Match: UBC25_ARATH (Probable ubiquitin carrier protein E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.627e-36
Identity = 73/119 (61.34%), Postives = 89/119 (74.79%), Query Frame = 2
Query:  200 EEPADTPSGQDFSDNKESLDEDDILRKFDLFKKFDAVEDHSDHHYASKASL-KQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 553
            EEP   P      D++   + +D L  +  FK+FD VED SDHHYASK +  KQ +  WAKRIQ+EW+ILE DLP+ IFVR YESRMDLLRAVI+GA+GTPYHDGLFFFD+FFP +YP+
Sbjct:  279 EEPPILPP----DDSRVKRNMEDYLGLYLFFKRFDIVEDFSDHHYASKGTTSKQHSKDWAKRIQDEWRILEKDLPEMIFVRAYESRMDLLRAVIIGAQGTPYHDGLFFFDIFFPDTYPS 393          
BLAST of CB417423 vs. ExPASy Swiss-Prot
Match: UBC26_ARATH (Probable ubiquitin carrier protein E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 4.902e-33
Identity = 80/139 (57.55%), Postives = 93/139 (66.91%), Query Frame = 2
Query:  143 NYTTHPSFYDPF-DTVHMSPEEPADTPSGQDFSDNKESLDEDDILRKFDLFKKFDAVEDHSDHHYASKA-SLKQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 553
            N T +P  YD    + H    EP    S QD S N   L E+  LR F   K+FD VED SDHHYASK  S KQ +  W K++Q +WKILENDLP+ I VR  ESRMDLLRAVI+GAEGTPYHDGLFFFD+ FP +YP+
Sbjct:  201 NPTPNPFSYDASASSSHPIAAEPIS--SVQD-SSNARKLKEE-FLRDF---KRFDTVEDFSDHHYASKGKSSKQHSKNWVKKVQADWKILENDLPEAISVRACESRMDLLRAVIIGAEGTPYHDGLFFFDIQFPDTYPS 332          
BLAST of CB417423 vs. ExPASy Swiss-Prot
Match: UBC23_ARATH (Probable ubiquitin carrier protein E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.206e-25
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 2
Query:  290 FKKFDAVEDHSDHHYASKASLKQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 553
            F++FD  +D  DHH+      K    +W K++ ++WKIL+N+LPD IFVR YE RMDLLRAVIVGA GTPY DGLFFFD   PS YP+
Sbjct:  824 FRRFDISQDPLDHHFLGVDGQKTKERQWFKKVDQDWKILQNNLPDGIFVRAYEDRMDLLRAVIVGAFGTPYQDGLFFFDFHLPSDYPS 911          
BLAST of CB417423 vs. ExPASy Swiss-Prot
Match: UBC24_ARATH (Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.762e-25
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 2
Query:  290 FKKFDAVEDHSDHHYASK---ASLKQPTNKWAKRIQEEWKILENDLPDTIFVRVYESRMDLLRAVIVGAEGTPYHDGLFFFDVFFPSSYPN 553
            F++FD V D SDHH+ S     +  Q T  W K++Q+EW  LE +LP+TI+VRV E RMDLLRA +VGA GTPYHDGLFFFD+  P  YP+
Sbjct:  633 FRQFDMVNDCSDHHFLSSDKGLAQSQVTKSWVKKVQQEWSNLEANLPNTIYVRVCEERMDLLRAALVGAPGTPYHDGLFFFDIMLPPQYPH 723          
The following BLAST results are available for this feature:
BLAST of CB417423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBC25_ARATH3.627e-3661.34Probable ubiquitin carrier protein E2 25 OS=Arabid... [more]
UBC26_ARATH4.902e-3357.55Probable ubiquitin carrier protein E2 26 OS=Arabid... [more]
UBC23_ARATH2.206e-2557.95Probable ubiquitin carrier protein E2 23 OS=Arabid... [more]
UBC24_ARATH3.762e-2557.14Probable ubiquitin-conjugating enzyme E2 24 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionEST0525 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P335 similar to unknown Arabidopsis protein (acc# NP_188154), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417423 ID=CB417423; Name=CB417423; organism=Citrus sinensis; type=EST; length=554bp
ACAGAATCAAGTTGGTTCTAGTAATTTATTTTATTCTGGTATGCCTGCAC
TTAAGGACACAGTGAATTATCCTCCTGCTGTAGGATCATTCATGCCTGCG
TGGCATGGGTCTTTGCAAGCTGAACTGAATTCAACTTTTGCTAACTACAC
TACTCATCCAAGTTTCTATGATCCATTTGATACTGTGCACATGTCTCCTG
AAGAACCTGCAGATACCCCTAGTGGTCAAGATTTTAGTGATAATAAGGAA
AGTTTAGATGAAGATGATATTTTGAGGAAGTTCGATCTTTTTAAAAAGTT
TGATGCTGTTGAAGATCATTCGGACCATCATTATGCTTCGAAGGCTTCTT
TGAAGCAGCCTACAAATAAATGGGCGAAGCGAATTCAGGAAGAGTGGAAA
ATCCTGGAAAATGATTTGCCAGATACAATTTTTGTGAGGGTTTACGAGTC
AAGGATGGATCTTTTGAGGGCTGTAATTGTAGGAGCAGAAGGCACTCCCT
ACCACGATGGCCTGTTTTTCTTTGATGTTTTCTTCCCTAGTAGCTATCCT
AATG
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