CB417424

Overview
NameCB417424
Unique NameCB417424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4976 contig Csv1_Contig4976:359..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB417424 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.579e-21
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 3 
Query:    3 IEETWQNNPLLPQDPYERATVRFWAKFVDD-LFWNXXXXXXXXXXXXXXXXXXXXXXXXXXXDGAIKEKSNLFNSAAGGESIGFLDIVFGVIGYWLPIYEEAGSMQTHT-QKFPAIAEWTTKFVNHPVIKENLPSTESLLPFFRQVHEFVSSA 455
            I+ETW+NNP+LP DPY+RA  RFW+KF+DD +                              +  +K+K        GGE  G +DI    I +W+PI++E   +Q  T +KFP + +W+ +F+NHP + E LP  + L  +F+  +E +S++
Sbjct:   77 IDETWKNNPILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFF-----GGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESLSAS 224
The following BLAST results are available for this feature:
BLAST of CB417424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GSTX6_SOYBN1.579e-2133.33Probable glutathione S-transferase OS=Glycine max ... [more]
back to top
Properties
Property NameValue
Genbank descriptionEST0526 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P336 similar to glutathione-S-transferase (acc# AAG34804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417424 ID=CB417424; Name=CB417424; organism=Citrus sinensis; type=EST; length=571bp
ACATCGAGGAGACATGGCAGAATAATCCTTTGTTGCCTCAAGATCCTTAC
GAAAGAGCCACGGTTCGTTTCTGGGCTAAATTTGTAGATGATTTGTTTTG
GAATAAAGCATTTGCGGCATTCATTGCGAAAGGAGAGGCAAAAGAGAAGA
TTGAAAAAGAAGTAATAGAAGGATTGGAAAAGATAGATGGAGCAATCAAA
GAGAAGAGCAACCTGTTTAATAGTGCTGCCGGAGGAGAGAGCATTGGTTT
TTTGGACATTGTATTTGGAGTCATCGGTTACTGGCTGCCTATTTATGAAG
AAGCCGGTTCAATGCAAACACACACTCAGAAATTTCCAGCCATTGCTGAA
TGGACCACCAAGTTTGTCAATCACCCTGTCATCAAAGAAAACTTACCATC
CACTGAGAGCTTGCTTCCGTTTTTCCGCCAAGTCCATGAGTTTGTATCAT
CAGCATCCAACAACTAATTATTTTAAGCTTGAAATTAAGTTAACTAATAA
GGGACTCTTTTGGAGATCGCCATCATGTTATGGTGTTCAACTAGTAGTGT
GATGTTGTGTGGAAAGTCTTG
back to top