CB417425

Overview
NameCB417425
Unique NameCB417425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   90 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYV FTDTERLIGDAAKN+VAMNP NTVFDAKRLIGRRFSDPSV+S
Sbjct:    1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPSVQS 88          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.541e-42
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   90 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKN+VAMNP NTVFDAKRLIGRRFSD SV+S
Sbjct:    1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPVNTVFDAKRLIGRRFSDASVQS 88          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 3.433e-42
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   90 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            M+GKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKN+VAMNP NTVFDAKRLIGRRFSD SV+S
Sbjct:    1 MSGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPVNTVFDAKRLIGRRFSDSSVQS 88          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.483e-42
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 3
Query:   90 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKN+VAMNP NTVFDAKRLIGRRF+D SV+S
Sbjct:    1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFTDSSVQS 88          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.855e-42
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 3
Query:   90 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYV FTD+ERLIGDAAKN+VAMNP NTVFDAKRLIGRRFSD SV+S
Sbjct:    1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQS 88          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 7.647e-42
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 3
Query:   99 KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRST 356
            KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN+VAMNPTNTVFDAKRLIGRRFS P+V+S+
Sbjct:    3 KGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSSPAVQSS 88          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.304e-41
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 3
Query:   90 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVR 350
            MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYV FTDTERLIGDAAKN+VA+NP NTVFDAKRLIGRRFSD SV+
Sbjct:    1 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVALNPINTVFDAKRLIGRRFSDASVQ 87          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.104e-40
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 3
Query:   90 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            MAGKGEGPAIGIDLGTTYS VGVWQHDRVEIIANDQGNRTTPSYVAFTD+ERLIGDAAKN+VAMNP NTVFDAKRLIGRRFSD SV++
Sbjct:    1 MAGKGEGPAIGIDLGTTYSRVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQA 88          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.750e-38
Identity = 73/84 (86.90%), Postives = 82/84 (97.62%), Query Frame = 3
Query:  102 GEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVRS 353
            G+GPAIGIDLGTTYSCVGV+QH +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKN+VAMNPTNT+FDAKRLIGR++ DP+V+S
Sbjct:    3 GKGPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKYDDPTVQS 86          
BLAST of CB417425 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.546e-37
Identity = 74/87 (85.06%), Postives = 80/87 (91.95%), Query Frame = 3
Query:   90 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNRVAMNPTNTVFDAKRLIGRRFSDPSVR 350
            M  K EG AIGIDLGTTYSCVGVW HDRVE+IANDQGNRTTPSYVAFT+TERLIGD+AKN+VAMNP NTVFDAKRLIGRRF DP+V+
Sbjct:    1 MENKIEGVAIGIDLGTTYSCVGVWLHDRVEVIANDQGNRTTPSYVAFTETERLIGDSAKNQVAMNPDNTVFDAKRLIGRRFQDPAVQ 87          
The following BLAST results are available for this feature:
BLAST of CB417425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7C_PETHY2.377e-4395.45Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP72_ARATH1.541e-4294.32Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP71_ARATH3.433e-4293.18Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP73_ARATH4.483e-4293.18Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP72_SOLLC5.855e-4293.18Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP70_MAIZE7.647e-4294.19Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP71_SOLLC1.304e-4193.10Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP7E_SPIOL1.104e-4092.05Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP70_CHICK8.750e-3886.90Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HSP70_PYRSA2.546e-3785.06Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]

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Properties
Property NameValue
Genbank descriptionEST0527 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P337 similar to dnaK-type molecular chaperone hsc70-3 (acc# JC4786), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417425 ID=CB417425; Name=CB417425; organism=Citrus sinensis; type=EST; length=558bp
AACAATCAATAAGTAAACACTAAAGCTCGCAAATCATCCGTGCTTTTTTT
CTTTTTTTATTGTTGATAGATTCTTGATTTTGTTAATCGATGGCTGGAAA
AGGCGAAGGTCCTGCTATTGGAATTGACTTGGGCACGACTTACTCCTGTG
TCGGTGTGTGGCAACATGATCGAGTTGAGATCATCGCTAATGATCAAGGT
AACCGAACGACGCCGTCTTATGTGGCGTTTACTGACACTGAGCGTTTGAT
CGGTGACGCTGCCAAGAACCGGGTCGCCATGAACCCCACCAACACTGTTT
TTGATGCTAAGCGTTTGATTGGGAGGCGATTCAGTGATCCTTCAGTACGG
TCAACAAGTAATAACCCAGCCGTTCGTTTTCGTCGACCTACATCATAAAG
GCTTGACATGTCTGTCATAAGCTTCCCAACATTTTTTGATAGATCTCCAA
GGGAAAATATTTCCATTTTCAAGTCCATCTTTGATGCCAAATGGTAAATA
AGATGTGCTGTAAGAATTGCCCCAGGAGGGACATCATCACCATCAGAAAA
TGATCCAG
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